Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4490g00015 ATGGATCTTTCTTTGAGTGTTGGCAGTGGATCTGGCGATGAGCAAAACACTGCAACCTCTCATCAGACTAGAAGGAGGTCTGCTCATCGTCACACTCCTATGCAGATCCAGCGACTTGAAGAGTTTTTCAAGGAGTGCCCACACCCTGATGAGGAACAACGCAGAGATTTAGGCAAGGAACTTGGTCTTGAACCTAAGCAAATCAAGTTCTGGTTTCAGAACAAGAGAACTCAGACCAAGACGCTGAATGAACGGATAGATAACAATGTTCTTCGTGCTGAGAATGAGAGAATTCAGTCTGAGAATTCAGCAATCAAAGAGGCTCTCAAGAGTGTGGCCTGCCCTTCTTGTGGGGGTCCCTCCTATGGAAATGAAGAGCAAAGACTTGCTATGATGAAACTGCTCCAAGAGAATGTCTATCTCAAGCACGAGTATGAAAAAGCGACAAGGCTTGTCGCAGACTATGCTGGGAATCCTCTGATAGTACAAAAGGATTTCCTAACCCTAGGAACTCCATCACCATCATCACAACATGCCATGCCGACCACGTCCATGTCCGATGACAATAGTAACATGTTGCCAAAACAAGGCATCATCAACAAGGCAGTGATGTTGGAGACAGCCATTAGTGCCATTGAAGAATTAATGAGGCTTATGCGTGTGGATGAGCCACTTTGGGTCAAGTCTGAAGCATTTGAGCTCAAGGAAGGCTTCTTTCTCCCTAACCCTGAAACTTATGAAAGGATCTTCCATAGGGCTCATCACCTCCGCAAGAAGCTTAATAATGCTCGTGTTGAGTGTTCTAAAGCTTCCTGTGTCATTAACATGGCTCCTTTGCAATTGGTTGGCATGTTTCTTGACTCTGAGAAATGGGCTAATCTATTCCCAACAATTGTTGGAAAAGCAAGCACATTGAAAGTACTTGAAGCTGGTTCGCTTGGGGGCAGGAATGGAGCCTTGCAGCTAATGCATGAAGAACTTCACATGCTTACAGCTATGGTGCCACCTCGTGAATTTGTGTTCCTTCGAGCTTGTTTCCAACCAGACAAGGCAACATGGGTGATAGGTGATGTGTCATTTGTGCCCCTCGAGGACATCGGCGACTTTACTTATTCTTCCTCTTGCTGGAAGCTTCCCTCTGGATGCATGATTCAGGAATTGCCCAATGGCTTCTCCAAGGTAACTTGGGTGGAGCATGTGGAAGTGGAACATGAAAGCCTGATAGTGCACATGTTGTATAGAAACCTGGCATTTAGCAGCATTGCTTATGGAGCTGAGCGATGGGTTGTGGCATTAGAGAGAATGTGTGAGAGAATTGGTTACACCGTAAGCCCTCACATTGCTCTTGATGGTGAAGCTGCTTCAGCGATGGGCGTTGTACCTGAAGGAAGAAGAAGCTTGATGAAGCTAGGGCATCGCATGATGAGGAGCTTCTGTGGAGTGATGAGCATGAATGAAACATCATGCGAAGAGTTTGAGGAGATAAGTGATGAGAATGAGACTGGAATCAGAATGTTCATTCGTCACAACCTGGAGAGAGGTCAGCCCCATGGCATCGTTCTCACTGCTGCTTCTCCTATTTGGCTCCCTCTTTCTCCCAACCGCATCTTCCACTACCTCCGCGACATCGCTCGCCGGTTCCAGTGGGATGTTCTTTGCAATGAAAATGAAGAGCAAGAGGTTGTGCGCATCTCAACTGGAACTCATCCTGGAAACTACATATCAATTATCCAGACACACAATGTGGACGGCAGCGTTGCGATTCTTCAAGAAACTTGTGTAGAGCCGATGGGTTATGTGCTGGTGTTTGCTCCCGTGGATAAGCTGACGATCAATGGGGTGATGCAAGGGGAGGATTCGGCCGCCGTGTCGATACTGCCGTCGGGCTTTGTGGTCATGAAGGACGACGTGGGAATATCCAATGGCGGCGGAAAGGACGGTGGTGGTTCATCTCCCGGCGATGGGTCAATACTGACAATGACTATGCAGATTCTGGTGAGTAGCAGTGTGGAAACGAAGAGCTTGAACAAGAAGAGTGTGGCTACGGTGAACGAACTCGTGAACACCACTCTCAACAAGATCAAGTTACTTTCAAATTACTACATCGGATACAGTAACTACTTTGCTTTCATATTGATTCAAATCTCAGCTAAGAACTACACTTTATTGCTCTGCCGTTCTCTCCGCCGGCAACAAAATCCCCCTTTTAGTGTTCTCTCCGACGTCACTGCCTTCTTATTCTCCGCTGCATCGTTTGCTGGCTTCTCCTACGGCATTATCGCTCAGATGGGGTCTTAA 2298 0.4713 MDLSLSVGSGSGDEQNTATSHQTRRRSAHRHTPMQIQRLEEFFKECPHPDEEQRRDLGKELGLEPKQIKFWFQNKRTQTKTLNERIDNNVLRAENERIQSENSAIKEALKSVACPSCGGPSYGNEEQRLAMMKLLQENVYLKHEYEKATRLVADYAGNPLIVQKDFLTLGTPSPSSQHAMPTTSMSDDNSNMLPKQGIINKAVMLETAISAIEELMRLMRVDEPLWVKSEAFELKEGFFLPNPETYERIFHRAHHLRKKLNNARVECSKASCVINMAPLQLVGMFLDSEKWANLFPTIVGKASTLKVLEAGSLGGRNGALQLMHEELHMLTAMVPPREFVFLRACFQPDKATWVIGDVSFVPLEDIGDFTYSSSCWKLPSGCMIQELPNGFSKVTWVEHVEVEHESLIVHMLYRNLAFSSIAYGAERWVVALERMCERIGYTVSPHIALDGEAASAMGVVPEGRRSLMKLGHRMMRSFCGVMSMNETSCEEFEEISDENETGIRMFIRHNLERGQPHGIVLTAASPIWLPLSPNRIFHYLRDIARRFQWDVLCNENEEQEVVRISTGTHPGNYISIIQTHNVDGSVAILQETCVEPMGYVLVFAPVDKLTINGVMQGEDSAAVSILPSGFVVMKDDVGISNGGGKDGGGSSPGDGSILTMTMQILVSSSVETKSLNKKSVATVNELVNTTLNKIKLLSNYYIGYSNYFAFILIQISAKNYTLLLCRSLRRQQNPPFSVLSDVTAFLFSAASFAGFSYGIIAQMGS 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4490g00015 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 696 IPR042160 -
Pral4490g00015 765 MobiDBLite consensus disorder prediction 1 22 - -
Pral4490g00015 765 MobiDBLite consensus disorder prediction 1 32 - -
Pral4490g00015 765 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Pral4490g00015 765 SUPERFAMILY Bet v1-like 461 680 - -
Pral4490g00015 765 Coils Coil 88 108 - -
Pral4490g00015 765 Gene3D - 11 98 - -
Pral4490g00015 765 CDD START_ArGLABRA2_like 201 437 - -
Pral4490g00015 765 SUPERFAMILY Homeodomain-like 6 82 IPR009057 -
Pral4490g00015 765 CDD homeodomain 25 80 IPR001356 GO:0003677
Pral4490g00015 765 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Pral4490g00015 765 SUPERFAMILY Bet v1-like 203 440 - -
Pral4490g00015 765 ProSiteProfiles START domain profile. 197 441 IPR002913 GO:0008289
Pral4490g00015 765 FunFam Homeobox-leucine zipper protein HDG1 11 98 - -
Pral4490g00015 765 Pfam START domain 208 438 IPR002913 GO:0008289
Pral4490g00015 765 Gene3D - 252 427 IPR023393 -
Pral4490g00015 765 SMART HOX_1 24 86 IPR001356 GO:0003677
Pral4490g00015 765 SMART START_1 206 438 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4490g00015 Pral-Chr4490 166353 174431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4490g00015 24 695 Homeobox Transcription Factor Family AT1G73360 40.825 3.19e-172 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4490g00015 START 1e-29 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4490g00015 K09338 - rcu:8266520 632.484