Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4490g00001 ATGGCGTCGTCCCAGGTTGAAATTGCTCTAACATCGCCGTTTGGTTGTGTTCTGAGAAAATATAATCATCATCGTGAGAGATGCAGGGAAAGTACCTCTCGAGTTTCTTCATCACAAGGAACAACTTTCCACCAGAACAATAATGACAGAAGCAGCTTTGTGGTCGGAGATCATCATGTAGCAGCACAAATGGATGTTGTTAAGAACATGAATAACAGCAACGTAGGATTGACGAAGAAGGAGAAAGAAAATCAATCCTCATCCTCGTCGAATAACAACAACAACGACCCTAATAGGCAATCACAAATTCTGGATCGATGGGCTGCAAGAAAAGCTAAAGAAATGGTATCAACAATTGAGACAGAAGCTGAACTTTTGGAGAATCTGGGTAATTCTTCTTCAACTTCTTCATTATCGTCATTATCAGAAACAACATTGAATAATCGTGGAGCTTCGTCTCTTGTTCAAATATGGGAAAAGAGGTTGAATAACCTGAACCACCAATCACTAAAGTGCAATACAACATCAAGCAGAACGTCATCGCTTGGGTCATCAGATGTTGGGGAACTCATGGATGAATCATCATCATCATCATTGTACTCAGATTGGGTAGGAGCAACAAGTACTGATACAAACGAAGCTGCATCATCATGTTCAACCCCAAAGGTGGCAGATATTATCAAGAGATTGAAGGAGAATAAATATGGAGATCAACAAGGACAACACACAAGCGTGGTGCTTCATCATGTGGCGAGTTCGCCTCGCTTTCGAGGCCGTCGAGCACTCACAGATTTGCTTATGCAGATGGAACGTGACAGACATGGAGAGCTCAATAATTTGGCTCAGCTTGCACCTGTTTCCAACTTTTCACAAAGAGGTCGAGGTCGTATTCAGTCACTCTTGCGGCTTAGATTATTAAAACGACACCATGAATCAACAACATATGAAAAGAAGAGACAACCAAAAGGGTCCACAATTATGCACCTAAGGGAAAGATTTAATGTAGAAGTAAAACAAGGAAGTACAACTCAGCCAGAAAAAGATAATTCAAGAAATACCCACCTTAATCAACCCGAAAGCCCTATTCCTGTTCATAACCCCATCGGCGAGCACAGGTCGAACCCGATCGGGTCAGACCCGGAGGTCAACATGACAAATGGCTGCCAAAATGACAATGATGACGATGCATATGATCACACAGAAGCATGTGCTCATAAACCAGAAGAAGAAGAAGCCAGTGCAAGTTCAGAAACAGTATGCTTGGAGGCTCAGGACAATATTGCATCACATGAAGTTGGCGAGACAAGAACTTGCTATATGGTTGAATCAGATGCAAATCATGAGACAAAAGAAGAAGCAGAGCTGGCAGAGGTAAAGCAGGATCATAGTGCTGAAACCGAAATCAATTATGTGGATAATGGAACAATAACGAATACTGAAGATCAAGATGAACATGCAAGTGATGAAGGGGAAGATTATGATGATGTTGATGATGATGACCGTAATGATGACGACGAACATTATTATGATTGGATCAGTCCTATTGCTCGCCCAAGAAGTTACTGGGAAGATCGTAGACAAGCCTGGTACAAGGAGATGCTTGACACTGCTTCCTCTGATAAAAGAGAGATACGTCAACTTCTTGAACGAAGAACAGTTTCAACTTTCCTTTCAAGTGACTTCAGAGAGAGAGTGGACAAATTGATGGAATACCACATAGGTTCACAAACACATTTTATCAGTAGCCAAGAAGATGATGAAGACAATGGAGGAAGAATGGGCCAACTAGTGTCATTTTTGGAACAACATATACAGCGCCATGGTCATAACCTAGAAGAAGCTGAAAAACAAGAAGAGGCACAAAAGGAGGAGGAGGAGGAGGAAGAAGAAGAGAGGTTGAGTAATAACAATGGAGGTTATAATGAAACCAGTGATGATGGCAATCAATCATCATCGTCATCATCATCAACAAACAATCTTATTTCCTCTTCTCCAAATATGTCATCATGGAGCTATAGAGACAACGAAGCCGCCAGTGATGATTCTGAAGACAGAGTTGATGAGTCTACTACATCATCTTCAACACAGCCTTCTCAATCTCCTACTCGCCAGTGCATTAATCCTCATTCAGTGGAAATGGATCTGATATGTGATATGAGAGGGCAAATGGAGCAACTATACAGAGAAATGGCTGAGATTAGAAAATCACTAAAGACCTGCATAGATATGCAGATGATGCTACAAAAATCAATGAAACGCGATGTTAACACAGCACTTAGAGAAAAGAAGAAGAAGAGGAAGAGCAATGATCAGAAGGCACCAAAGAAAGGCAACTGTTGTATCTGCTATGAGAAGAAAGTCGACTCACTTTTATACAGATGTGGGCACATGTGTGCGTGTATGAACTGTGCAAATGAGTTGCAATGGAACAGCGGCAAGTGTCCAATATGTCGAGCTCCAATAGCTGATGTTGTGAGAGTTTATGTGGATGCATAG 2496 0.4151 MASSQVEIALTSPFGCVLRKYNHHRERCRESTSRVSSSQGTTFHQNNNDRSSFVVGDHHVAAQMDVVKNMNNSNVGLTKKEKENQSSSSSNNNNNDPNRQSQILDRWAARKAKEMVSTIETEAELLENLGNSSSTSSLSSLSETTLNNRGASSLVQIWEKRLNNLNHQSLKCNTTSSRTSSLGSSDVGELMDESSSSSLYSDWVGATSTDTNEAASSCSTPKVADIIKRLKENKYGDQQGQHTSVVLHHVASSPRFRGRRALTDLLMQMERDRHGELNNLAQLAPVSNFSQRGRGRIQSLLRLRLLKRHHESTTYEKKRQPKGSTIMHLRERFNVEVKQGSTTQPEKDNSRNTHLNQPESPIPVHNPIGEHRSNPIGSDPEVNMTNGCQNDNDDDAYDHTEACAHKPEEEEASASSETVCLEAQDNIASHEVGETRTCYMVESDANHETKEEAELAEVKQDHSAETEINYVDNGTITNTEDQDEHASDEGEDYDDVDDDDRNDDDEHYYDWISPIARPRSYWEDRRQAWYKEMLDTASSDKREIRQLLERRTVSTFLSSDFRERVDKLMEYHIGSQTHFISSQEDDEDNGGRMGQLVSFLEQHIQRHGHNLEEAEKQEEAQKEEEEEEEEERLSNNNGGYNETSDDGNQSSSSSSSTNNLISSSPNMSSWSYRDNEAASDDSEDRVDESTTSSSTQPSQSPTRQCINPHSVEMDLICDMRGQMEQLYREMAEIRKSLKTCIDMQMMLQKSMKRDVNTALREKKKKRKSNDQKAPKKGNCCICYEKKVDSLLYRCGHMCACMNCANELQWNSGKCPICRAPIADVVRVYVDA 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4490g00001 831 Coils Coil 109 129 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 335 398 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 336 360 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 484 505 - -
Pral4490g00001 831 Pfam Zinc finger, C3HC4 type (RING finger) 776 824 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 752 775 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 33 51 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 636 675 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 30 51 - -
Pral4490g00001 831 SUPERFAMILY RING/U-box 778 823 - -
Pral4490g00001 831 Coils Coil 597 637 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 613 707 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 689 707 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 80 100 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 446 466 - -
Pral4490g00001 831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 754 830 IPR013083 -
Pral4490g00001 831 PANTHER BNAC05G24000D PROTEIN 1 830 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 446 507 - -
Pral4490g00001 831 ProSiteProfiles Zinc finger RING-type profile. 779 818 IPR001841 -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 618 632 - -
Pral4490g00001 831 MobiDBLite consensus disorder prediction 171 190 - -
Pral4490g00001 831 CDD mRING-HC-C3HC5_NEU1 776 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4490g00001 Pral-Chr4490 25079 28858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4490g00001 779 827 C3H Transcription Factor Family AT3G06140 42.857 1.35e-08 55.8