Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4488g00028 ATGCATAACAGGAGAGAGCTTTGTAGAAATTATCAGCGAGGCAGCTGCCAATATGGAGAAAGGTGTAAATTTCTTCACACGCTGCCGCAACAGCAAAAGCAAAGTACCAATCCTTTTGGATTTGGGTCCCACTCCAGTTCGCACCAAAAACAAACTGCCAATCCTTTTGGATTTGGGTCCCACTCCAGTTCACAGCAACAGCATAAGACCAATCCTTTTGGATTTGGTGTGCAGAACAGCTCCCAGTCAATGGGGGGCACTAGCTCAGAGTTCAAACACCAGTTCAAGCCTTTTGATAACAAATGGACTCGACCTTCTTCCTCACCCCAAAGTAGTGCTTCACGAAAAACTGATGCCAATTCTCAACAAGCGAATCATAAGTGCACAGATCCTGAAGCTTGCAAACGTCAGATTGTAGAAGATTTTGAGCAAGAGAAACCGCTTTGGAAGCTTACATGCTATGGTCATTCTAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCAGCTGCATATGAGGATGCTAAACGGGGGATGACCTTACAATCAATTGTGGAGAGAGAGAGAAATCTACTAAATTCCAAGTTAGTGGAGTTTCAGAACCTTCTTCGTGAACCTTACAAAATACCGCTGAGTTCTTCTCTTACAAGTGATAAGCATCAGTCTCTTGGAATTGATGCAAACCCATTTTCAAGGACTTCACTAGATAATAATCCTCTGTCTGTCTCTAGCTTTAGTCAACTGGGGGCTTCAATGAACATGGGTATTGAAAGGCCTTTTGCACCCCCAGTAGATACTCTGGCTCAACGTAGCTCCTTTGGAACTGGAGGCATAGGAAATCTGCTGGCATCCAATGTGACAAACCAAACTGGCGGAGGCATTGCTGGTGGCCAAATTAACTCCTTTCCCGCATCAGCTGAAGTTGCAGAGTTTCCCAGCGTTACCACACAGCAACCATTTATAGGAAGCAATGGCCCTACTACTGGTATGATGTTTCCGGCAAGCACAGGTGTTCAGTTGGTAAGTAAGTCCAAAGATGAGAATGTCTCTGGAGATGCCAGTATTTGGTTAAAAGAGAAATGGATCCCTGGAGAGATTCCGGAAGAAGCTCCTCCTGATGCATTTATTAGGTAG 1152 0.4462 MHNRRELCRNYQRGSCQYGERCKFLHTLPQQQKQSTNPFGFGSHSSSHQKQTANPFGFGSHSSSQQQHKTNPFGFGVQNSSQSMGGTSSEFKHQFKPFDNKWTRPSSSPQSSASRKTDANSQQANHKCTDPEACKRQIVEDFEQEKPLWKLTCYGHSKGAPCDIVGDISYEELRAAAYEDAKRGMTLQSIVERERNLLNSKLVEFQNLLREPYKIPLSSSLTSDKHQSLGIDANPFSRTSLDNNPLSVSSFSQLGASMNMGIERPFAPPVDTLAQRSSFGTGGIGNLLASNVTNQTGGGIAGGQINSFPASAEVAEFPSVTTQQPFIGSNGPTTGMMFPASTGVQLVSKSKDENVSGDASIWLKEKWIPGEIPEEAPPDAFIR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4488g00028 383 MobiDBLite consensus disorder prediction 100 128 - -
Pral4488g00028 383 MobiDBLite consensus disorder prediction 33 90 - -
Pral4488g00028 383 SUPERFAMILY CCCH zinc finger 4 30 IPR036855 GO:0046872
Pral4488g00028 383 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 100 249 - -
Pral4488g00028 383 ProSiteProfiles Zinc finger C3H1-type profile. 3 29 IPR000571 GO:0046872
Pral4488g00028 383 SMART c3hfinal6 3 28 IPR000571 GO:0046872
Pral4488g00028 383 MobiDBLite consensus disorder prediction 33 130 - -
Pral4488g00028 383 Gene3D - 3 33 - -
Pral4488g00028 383 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 4 26 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4488g00028 Pral-Chr4488 146331 156633 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4488g00028 zf-CCCH 3.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4488g00028 K14321 - gmx:100814339 423.705