Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4488g00027 ATGCATAACAGGAGAGAGCTTTGTAGAAATTATCAGCGAGGCAGCTGCCAATATGGAGAAAGGTGTAAATTTCTTCACACGCTGCCGCAACAGCAAAAGCAAAGTACCAATCCTTTTGGATTTGGGTCCCACTCCAGTTCGCACCAAAAACAAACTGCCAATCCTTTTGGATTTGGGTCCCACTCCAGTTCACAGCAACAGCATAAGACCAATCCTTTTGGATTTGGTGTGCAGAACAGCTCCCAGTCAATGGGGGGCACTAGCTCAGAGTTCAAACACCAGTTCAAGGTTCTTCCTCTTCCTGTCCTTTTGATAACAAATGGACTCGACCTTCTTCCTCACCCCAAAGTAGTGCTTCACGAAAAACTGATGCCAATTCTCAACAAGCGAATCATAAATCCTGAAGCTTGCAAACGTCAGATTGTAGAAGATTTTGAGCAAGAGAAACCGCTTTGGAAGCTTACATGCTATGGTCATTCTAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCAGCTGCATATGAGGATGCTAAACGGGGGATGACCTTACAATCAATTGTGGAGAGAGAGAGAAATCTACTAAATTCCAAGTTAGTGGAGTTTCAGAACCTTCTTCGTGAACCTTACAAAATACCGCTGAGTTCTTCTCTTACAAGTGATAAGCATCAGTCTCTTGGAATTGATGCAAACCCATTTTCAAGGACTTCACTAGATAATAATCCTCTGTCTGTCTCTAGCTTTAGTCAACTGGGGGCTTCAATGAACATGGGTATTGAAAGGCCTTTTGCACCCCCAGTAGATACTCTGGCTCAACGTAGCTCCTTTGGAACTGGAGGCATAGGAAATCTGCTGGCATCCAATGTGACAAACCAAACTGGCGGAGGCATTGCTGGTGGCCAAATTAACTCCTTTCCCGCATCAGCTGAAGTTGCAGAGTTTCCCAGCGTTACCACACAGCAACCATTTATAGGAAGCAATGGCCCTACTACTGGTATGATGTTTCCGGCAAGCACAGGTGTTCAGTTGGTAAGTAAGTCCAAAGATGAGAATGTCTCTGGAGATGCCAGTATTTGGTTAAAAGAGAAATGGATCCCTGGAGAGATTCCGGAAGAAGCTCCTCCTGATGCATTTATTAGGTAG 1161 0.4453 MHNRRELCRNYQRGSCQYGERCKFLHTLPQQQKQSTNPFGFGSHSSSHQKQTANPFGFGSHSSSQQQHKTNPFGFGVQNSSQSMGGTSSEFKHQFKVLPLPVLLITNGLDLLPHPKVVLHEKLMPILNKRIINPEACKRQIVEDFEQEKPLWKLTCYGHSKGAPCDIVGDISYEELRAAAYEDAKRGMTLQSIVERERNLLNSKLVEFQNLLREPYKIPLSSSLTSDKHQSLGIDANPFSRTSLDNNPLSVSSFSQLGASMNMGIERPFAPPVDTLAQRSSFGTGGIGNLLASNVTNQTGGGIAGGQINSFPASAEVAEFPSVTTQQPFIGSNGPTTGMMFPASTGVQLVSKSKDENVSGDASIWLKEKWIPGEIPEEAPPDAFIR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4488g00027 386 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 4 26 IPR000571 GO:0046872
Pral4488g00027 386 MobiDBLite consensus disorder prediction 33 88 - -
Pral4488g00027 386 ProSiteProfiles Zinc finger C3H1-type profile. 3 29 IPR000571 GO:0046872
Pral4488g00027 386 SUPERFAMILY CCCH zinc finger 4 30 IPR036855 GO:0046872
Pral4488g00027 386 Gene3D - 2 94 - -
Pral4488g00027 386 SMART c3hfinal6 3 28 IPR000571 GO:0046872
Pral4488g00027 386 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 135 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4488g00027 Pral-Chr4488 146331 156633 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4488g00027 zf-CCCH 3.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4488g00027 K14321 - gmx:100814339 388.652