Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4488g00023 ATGGAGAAGCATTCAGAGAAGCAGAAATCATCTGCTAATGATCATAATGCTGGTGAATTGGCATTCATTTCCTCTTATTCAGAAGACAGCCGGGAATCTGTGGACAAGTGGATGGCATTTCCTAGCGAATCAAATTTTGTCAATTCTAGCAGCTCAGCAAATATGGATGATTTTGGGGCTAACAATGGAAAGAAAGATGATAATGCAAGGGGACGTCTGAATGAGAAGACACCTTTTAATCATCAAATTTTGACTGAAGCAAGCATTGCTGAGAGAACTGCCGAATGGGGCCTTGTGATGAACTCAGGTAGTTTTAAAGCAGTAGGAGGAGTGACAACTAGTTCCTCCCTCGATGGTGAAAAAAGCAAAAATTTGTCAGATAGATTTACTGCAGCAGTATCAACAAGGACATCTGAAGAATCAAATCATGGGTCAGAGTCATCATCAGGGGCATTCCCGAGGGTATCACAAGAGTTGAAGGAAGCCTTGGCGTCACTGCAACAAACGTTTGTTGTCTCAGATGCAACTAAACCAGACTGCCCAATAATGTATGCCAGCAGTGGATTTTTCAGTATGACAGGTTATTCTTCAAAGGAGATCATTGGGAGGAATTGCCGGTTTCTTCAGGGCCCTGAAACAGACCAGAAAGAAGTGGCCAAAATTCGAGATGCAGTTAAAAACGGAAAAAGCTATTGTGGCAGGCTTTTAAACTACAAGAAAGATGGAACCCTGTTCTGGAATCTTCTTACTATCACTCCTATAAGAGATAGCCAGGGCAATGTCATCAAGTTCATTGGAATGCAGGTTGAGGTGAGCAAATATACTGAAGGTGTGAATGAAAAGGCGTTGCGGCCAAATGGGTTGCCTAAGTCATTAATTCGTTATGATGCCCGTCAAAAGGAAAAAGCTTTGGGTTCCATCGCAGAGGTTGTCCAAACTGTCAAGGACCCAAAATCCATCATTCGGTCTGTGAGCCAAGACAATGCCATTAAACTTGAAGAGCAAGAAAAAATCAATTCTGATTTTGTTTTGCCGAAATCTGTTGAAATTGAGAGTACTAGTTCAACAAAGAGGCAAACTACTTCACTAGACTTCGACGTTGATAAAAGCAAAAGGAAGTCAGGGCGCATTTCTTTCATGAGTTTTAAAGGGAGATCTCCAAGCTCTACAGGGAAGCATGATGAAAAGCCCATTGTTGAGCCAGAGGTTTTGATGACTAAGGACATGGAACGTTCTGACAGTTGGGAGCGTGCTCAAAGAGAGAGGGATATACGACAGGGAATCGATCTAGCAACCACATTGGAGCGCATTGAAAAGAATTTTGTGATTTCGGATCCTAGACTTCCAGACAACCCAATTATATATGCGTCTGATAGCTTTCTTGAACTTACAGAATATACTCGAGAGGAAATATTAGGAAGAAACTGTCGGTTTCTTCAAGGACCAGAAACAGATCAAGCAACCGTAGCAAAGATTAGAAGTGCTATAAGAGAACAAAGGGAAATCACTGTTCAGCTTATCAACTATACCAAGAGTGGAAAGAAGTTCTGGAATTTGTTCCACTTGCAGCCTATGCGTGATCAAAAGGGTGAGCTTCAATACTTTATAGGCGTCCAATTAGATGGAAGTGATCATGTGGAACCTTTAAGAAACCGCCTATCTGAGAAAACAGAGCAACAAAGTGCAAAGTTGGTCAAAGCAACTGCAGAAAATGTTGATGAGGCTGTTCGAGAGCTTCCTGATGCCAACTTGAGACCGGAAGATTTGTGGGCAATTCATTCTCAGCCTGTCTTCCCGAGACCTCATAAAAAGGAAAGTTCTTCTTGGTTAGCAATCCAGAAGCTAACTGCAAGTGGCGAAAAAATTGGACTGCATCATTTTAAGCCAATAAGGCCGTTGGGTTGTGGTGATACTGGCAGTGTTCACCTTGTGGAGCTTCAAGGTGCAGGTGAACTATATGCAATGAAGGCAATGGAAAAATCAGTCTTGCTAGATCGTAATAAGGTTCATCGAGCATGCATTGAGAGAGAGATTATATCGTTGCTGGATCATCCTTTTCTTCCCTCTCTATACACTTCTTTTCAGACTTCTACACATGTATGCTTGATAACAGACTTCTGCCCTGGTGGTGAATTATTTGCATTGTTGGATAAGCAACCCATGAAGATTTTCAAGGAGGAATCAGCAAGATTCTATGCAGCAGAGGTTGTTATTGGTTTAGAATACCTCCACTGCTTAGGTATAATTTATCGAGACCTAAAGCCTGAAAATATTTTACTTCAGAAGGATGGCCATATTGTATTAACTGATTTTGATTTATCATTCATGACTCCTTGTAAACCCCAGATTGTGAAGCATCCTCCACCTAGAAGAAGATCGAGAAGTCAACCACCACCTACATTTGTTGCGGAGCCTACTGCACAGTCAAACTCCTTTGTTGGAACAGAAGAATATATAGCTCCTGAAATTATAACTGGATCTGGGCACAGCAGTGCGATAGATTGGTGGGCTCTTGGTATATTGTTGTATGAAATGCTCTATGGCCGTACACCATTCAGAGGAAAGAATAGGCAGAAGACATTTGCAAACATCTTGCACAAAGATCTTACGTTTCCAAGCAGTATCCCGGCAAGCCTTGCTGCCAGGCAGCTGATTAATGCACTATTGCAAAGAGACCCAGCCAACCGTTTAGGTTCAAGTACTGGAGCTAATGAAATCAAACAACATCCGTTTTTCCGTGGAATTAGTTGGCCTTTAATCCGTTGCATGGATCCGCCACCTCTGGAAGCTCCTCTTAAATTGATAGGAAAAGACCCAATACATAAAGAAGTGAAATGGGAAGATGATGGAGTGCTTGTTCGCTCAATAGATTTGGACATCTTCTGA 2886 0.4193 MEKHSEKQKSSANDHNAGELAFISSYSEDSRESVDKWMAFPSESNFVNSSSSANMDDFGANNGKKDDNARGRLNEKTPFNHQILTEASIAERTAEWGLVMNSGSFKAVGGVTTSSSLDGEKSKNLSDRFTAAVSTRTSEESNHGSESSSGAFPRVSQELKEALASLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEIIGRNCRFLQGPETDQKEVAKIRDAVKNGKSYCGRLLNYKKDGTLFWNLLTITPIRDSQGNVIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSIAEVVQTVKDPKSIIRSVSQDNAIKLEEQEKINSDFVLPKSVEIESTSSTKRQTTSLDFDVDKSKRKSGRISFMSFKGRSPSSTGKHDEKPIVEPEVLMTKDMERSDSWERAQRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIYASDSFLELTEYTREEILGRNCRFLQGPETDQATVAKIRSAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKESSSWLAIQKLTASGEKIGLHHFKPIRPLGCGDTGSVHLVELQGAGELYAMKAMEKSVLLDRNKVHRACIEREIISLLDHPFLPSLYTSFQTSTHVCLITDFCPGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHIVLTDFDLSFMTPCKPQIVKHPPPRRRSRSQPPPTFVAEPTAQSNSFVGTEEYIAPEIITGSGHSSAIDWWALGILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPASLAARQLINALLQRDPANRLGSSTGANEIKQHPFFRGISWPLIRCMDPPPLEAPLKLIGKDPIHKEVKWEDDGVLVRSIDLDIF 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4488g00023 961 ProSiteProfiles Protein kinase domain profile. 627 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4488g00023 961 Gene3D PAS domain 415 579 - -
Pral4488g00023 961 Gene3D PAS domain 169 342 - -
Pral4488g00023 961 ProSiteProfiles PAS repeat profile. 155 228 IPR000014 -
Pral4488g00023 961 CDD PAS 182 271 IPR000014 -
Pral4488g00023 961 Pfam PAS domain 176 272 IPR000014 -
Pral4488g00023 961 Pfam PAS domain 449 541 IPR000014 -
Pral4488g00023 961 PANTHER FLIPPASE KINASE 1-RELATED 125 929 - -
Pral4488g00023 961 ProSiteProfiles PAC domain profile. 229 283 IPR000700 -
Pral4488g00023 961 MobiDBLite consensus disorder prediction 127 153 - -
Pral4488g00023 961 SUPERFAMILY PYP-like sensor domain (PAS domain) 176 268 IPR035965 -
Pral4488g00023 961 MobiDBLite consensus disorder prediction 782 806 - -
Pral4488g00023 961 NCBIfam PAS domain S-box protein 452 544 IPR000014 -
Pral4488g00023 961 NCBIfam PAS domain S-box protein 181 272 IPR000014 -
Pral4488g00023 961 MobiDBLite consensus disorder prediction 45 73 - -
Pral4488g00023 961 SUPERFAMILY Protein kinase-like (PK-like) 604 934 IPR011009 -
Pral4488g00023 961 SMART pas_2 157 226 IPR000014 -
Pral4488g00023 961 SMART pas_2 428 497 IPR000014 -
Pral4488g00023 961 ProSiteProfiles PAS repeat profile. 426 499 IPR000014 -
Pral4488g00023 961 FunFam LOV domain-containing protein 626 710 - -
Pral4488g00023 961 MobiDBLite consensus disorder prediction 111 153 - -
Pral4488g00023 961 CDD STKc_phototropin_like 625 935 - -
Pral4488g00023 961 ProSiteProfiles PAC domain profile. 500 554 IPR000700 -
Pral4488g00023 961 CDD PAS 449 541 IPR000014 -
Pral4488g00023 961 ProSitePatterns Protein kinases ATP-binding region signature. 633 656 IPR017441 GO:0005524
Pral4488g00023 961 Gene3D Phosphorylase Kinase; domain 1 626 710 - -
Pral4488g00023 961 Coils Coil 550 570 - -
Pral4488g00023 961 Gene3D Transferase(Phosphotransferase) domain 1 711 921 - -
Pral4488g00023 961 FunFam Putative LOV domain-containing protein 711 924 - -
Pral4488g00023 961 Pfam Protein kinase domain 629 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4488g00023 961 SUPERFAMILY PYP-like sensor domain (PAS domain) 445 541 IPR035965 -
Pral4488g00023 961 SMART serkin_6 627 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4488g00023 961 SMART pac_2 232 274 IPR001610 -
Pral4488g00023 961 SMART pac_2 503 545 IPR001610 -
Pral4488g00023 961 FunFam LOV domain-containing protein 415 579 - -
Pral4488g00023 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Pral4488g00023 961 FunFam Putative LOV domain-containing protein 169 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4488g00023 Pral-Chr4488 118493 139786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4488g00023 87 960 AGC Kinase Gene Family AT5G58140 74.830 0.0 1328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pral4488g00023 Pkinase 1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4488g00023 K20715 - gmx:100804783 1497.64