Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4488g00015 ATGTATCAGCCAAACAGTGTTCCTAGTTTAAGTCTACTTGGAAGCAACTCACTGGTACATGGTCAGCAATTTGATCGTGGTGGCAGTACAATGGACCCAATCAACGGAGGGAACAGTCTAACCAACAATTCCAATCTGAGCTCAAAGCAACGGCTACGCTGGACACATGAGCTGCATGAACGCTTTGTTGATGCTGTGGCACAGCTTGGTGGGCCTGATCGTGCCACACCTAAAGGTGTCCTCAGAGTGATGGGTGTACATGGCTTAACAATATATCACGTCAAAAGCCATCTGCAGAAATATCGTCTTGCTAAATACCTCCCTGACTCCTCATCTGATGGGAAAAAAGCTGACAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATGGTTCATCAGGGATGCATATTACTGAGACACTAAAGCTGCAAATGGAGGTGCAGAAGCGATTACATGAGCAATTAGAGGTTCAGAGACAGCTACAACTTCGGATTGAAGCCCAGGGTAAATACTTGAAGAAGATAATTGAAGAGCAACAGCGGCTCAGTGGCGTTCTTTCCCAAGCACCTGGCTCTGGGGATGCAACCTCAGAGCCAGGTGACACCTGCCAAGACCCTGACAATAGGAATGACCCGTCAACCCCTGCCCCTACATCTGAGTGCCCGCTTCAGGAAAAAGCCACTAAAGAATATGCTCCGGCTAAGAGTCTTTCAATTGACGAATCCTTGTCATCTCACAACGAACCATTAACGCCGGATTCTGGCTGCCATGCTGGTTCCCCTACCAACAGCCCAAGAGAGAAGAGAATGACAAAAAAACAACGGGTGAGCATGGAAGGAGCATATTCTAAACCTGAAATGGTGCTTCCACATCATATACTTGAGTCGAGCATGTCATCAATTCAGCCATTAAGCAGAGTGTTTCCTACCCATGAGCAGTATGATCCTTCACTAGGAATACCTACTAGAAGTAATGAGGAACTGGATAAGGTTGGCGGGGGCAATCTGTGA 1011 0.4688 MYQPNSVPSLSLLGSNSLVHGQQFDRGGSTMDPINGGNSLTNNSNLSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVHGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDMLSNLDGSSGMHITETLKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSQAPGSGDATSEPGDTCQDPDNRNDPSTPAPTSECPLQEKATKEYAPAKSLSIDESLSSHNEPLTPDSGCHAGSPTNSPREKRMTKKQRVSMEGAYSKPEMVLPHHILESSMSSIQPLSRVFPTHEQYDPSLGIPTRSNEELDKVGGGNL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4488g00015 336 MobiDBLite consensus disorder prediction 109 125 - -
Pral4488g00015 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Pral4488g00015 336 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Pral4488g00015 336 MobiDBLite consensus disorder prediction 184 221 - -
Pral4488g00015 336 FunFam Myb family transcription factor 48 106 - -
Pral4488g00015 336 MobiDBLite consensus disorder prediction 108 133 - -
Pral4488g00015 336 MobiDBLite consensus disorder prediction 238 265 - -
Pral4488g00015 336 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Pral4488g00015 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Pral4488g00015 336 Gene3D - 48 107 - -
Pral4488g00015 336 MobiDBLite consensus disorder prediction 184 284 - -
Pral4488g00015 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 43 323 IPR044848 GO:0003700
Pral4488g00015 336 MobiDBLite consensus disorder prediction 21 46 - -
Pral4488g00015 336 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Pral4488g00015 336 MobiDBLite consensus disorder prediction 310 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4488g00015 Pral-Chr4488 72735 76006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4488g00015 84 336 G2-like Transcription Factor Family AT2G01060 63.922 1.44e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4488g00015 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4488g00015 - - gmx:100786925 485.723