Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4488g00012 ATGGACCCAATCAACGGAGGGAACAGTCTAACCAACAATTCCAATCTGAGCTCAAAGCAACGGCTACGCTGGACACATGAGCTGCATGAACGCTTTGTTGATGCTGTGGCACAGCTTGGTGGGCCTGATCGTGCCACACCTAAAGGTGTCCTCAGAGTGATGGGTGTACATGGCTTAACAATATATCACGTCAAAAGCCATCTGCAGAAATATCGTCTTGCTAAATACCTCCCTGACTCCTCATCTGATGGGAAAAAAGCTGACAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATGGTTCATCAGGGATGCATATTACTGAGACACTAAAGCTGCAAATGGAGGTGCAGAAGCGATTACATGAGCAATTAGAGGTTCAGAGACAGCTACAACTTCGGATTGAAGCCCAGGGTAAATACTTGAAGAAGATAATTGAAGAGCAACAGCGGCTCAGTGGCGTTCTTTCCCAAGCACCTGGCTCTGGGGATGCAACCTCAGAGCCAGGTGACACCTGCCAAGACCCTGACAATAGGAATGACCCGTCAACCCCTGCCCCTACATCTGAGTGCCCGCTTCAGGAAAAAGCCACTAAAGAATATGCTCCGGCTAAGAGTCTTTCAATTGACGAATCCTTGTCATCTCACAACGAACCATTAACGCCGGATTCTGGCTGCCATGCTGGTTCCCCTACCAACAGCCCAAGAGAGAAGAGAATGACAAAAAAACAACGGGTGAGCATGGAAGGAGCATATTCTAAACCTGAAATGGTGCTTCCACATCATATACTTGAGTCGAGCATGTCATCAATTCAGCCATTAAGCAGAGTGTTTCCTACCCATGAGCAGTATGATCCTTCACTAGGAATACCTACTAGAAGTAATGAGGAACTGGATAAGGTTGGCGGGGGCAATCTGTGA 921 0.4723 MDPINGGNSLTNNSNLSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVHGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDMLSNLDGSSGMHITETLKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSQAPGSGDATSEPGDTCQDPDNRNDPSTPAPTSECPLQEKATKEYAPAKSLSIDESLSSHNEPLTPDSGCHAGSPTNSPREKRMTKKQRVSMEGAYSKPEMVLPHHILESSMSSIQPLSRVFPTHEQYDPSLGIPTRSNEELDKVGGGNL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4488g00012 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Pral4488g00012 306 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Pral4488g00012 306 MobiDBLite consensus disorder prediction 154 254 - -
Pral4488g00012 306 FunFam Myb family transcription factor 18 76 - -
Pral4488g00012 306 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Pral4488g00012 306 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Pral4488g00012 306 MobiDBLite consensus disorder prediction 79 95 - -
Pral4488g00012 306 MobiDBLite consensus disorder prediction 280 306 - -
Pral4488g00012 306 MobiDBLite consensus disorder prediction 154 191 - -
Pral4488g00012 306 Gene3D - 18 77 - -
Pral4488g00012 306 MobiDBLite consensus disorder prediction 208 235 - -
Pral4488g00012 306 MobiDBLite consensus disorder prediction 78 103 - -
Pral4488g00012 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 293 IPR044848 GO:0003700
Pral4488g00012 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4488g00012 Pral-Chr4488 72735 77467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4488g00012 54 306 G2-like Transcription Factor Family AT2G01060 63.922 4.31e-100 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4488g00012 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4488g00012 - - gmx:100784511 451.055