Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral447g00003 ATGTTCCAGCAGCCAAACATGATGGAAGGTCAGCTCCTCCCAGCACTGGACATGGCTCCAAACACATCAGAGAGCGACATCCCTCGAATCCGAGACGACGATTTCGACACTGCCACCAAGTCCGGGAGTGAAAATCAGGAAAATGGCGCCTCCGGTGACGACCAAGACCAACGCCCCAAGAAGAAGCGCTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGCCCTCATCCCGATGACAAGCAAAGGAAGGAGCTAAGTCGCGAATTAGGGTTGGAGCCATTGCAGGTCAAGTTCTGGTTCCAAAACAAACGCACCCAGATGAAGAACCAACATGAGCGGCACGAGAACTCGCACCTCAGAGCCGAAAATGAAAAGCTTCGTGCCGATAACATGAGGTACAGAGAAGCTCTTGGCAATGCCTCTTGTCCTAACTGTGGTGGACCAACCGCTATAGGAGAAATGTCCTTCGATGAACATCATTTGAGACTCGAAAATGCCCGCCTAAGAGAAGAGATTGATAGAATTTCCGCAATTGCTGCCAAGTACGTAGGGAAGCCGGTGGTGAACTATCCGCTACTCTCTCCATCTTCGGTTCCACCTCGTCCTCTAGAGCTTGGGGTTGGCGGTGGTTATGGCGGACAGGCAGGTATTGCTGGCGGCACCGGTGACATGTATGGAGGAGCCGGAGATCTTTTGAGGTCCATAAGTGGACTCACAGAAGCCGATAAGCCGATGATCATAGAGCTTGCTGTTGCGGCCATGGAAGAACTGGTGAGAATGGCTCAGATGGGGGAGCCTCTTTGGATGACCACCCTCGATGGCTCCACCACTGTGCTCAATGAGGAAGAGTACATGAGGTCTTTTCCTCGAGGAATTGGACCTAAACCCAGCGACTTGAAATGCGAAGCTTCACGAGAAACTGCACTTGTCATCATGAATCACATCAACCTCGTCGAGATTCTCATGGATGTGAACCAGTGGTCGACAGTGTTCTCTGGCATAGTGTCAAGAGCAATGACCATGGAAGTACTATCAACGGGGGTGGCCGGGAACTACAACGGTGCCTTGCAAGTGATGACAGCAGAGTTGCAAGTGCCTTCACCTCTAGTGCCAACTCGAGAGAGTTATTTCGTGAGGTATTGTAAGCAGCACGCTGACGGCACATGGGCAGTAGTGGACGTCTCTCTCGACCATCTCAGCACTGCTCCTGTCAAATGTAGAAGACGACCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTATTCCAAGGTGACGTGGATTGAACATGTAGAAGTGGATGATAGAGGTGTACATAGTCTATACAAGCAGCTCGTTAGTTCAGGCCACGCTTTTGGTGCAAAACGATGGGTTGCCACCTTGGATCGACAGTGCGAAAGGCTTGCTAGTGCCATGGCTTCCAACATTCCCACTGCTGATGTTGGAGTGATAACAAACCAAGACGGGAGGAGGAGCATGTTGAAGCTGGCGGAGAGAATGGTGATAAGCTTCTGTGCGGGAGTGAGCGCTTCCACGGCTCACACATGGACAACACTCTCTGGAACCGGGGCGGACGATGTTCGGGTCATGACCCGAAAGAGCGTGGACGACCCGGGAAGACCTCCTGGTATTGTTCTAAGTGCCGCAACCTCTTTCTGGCTTCCTGTTCCCCCCGAGCGAGTTTTTGACTTCCTCCGTGATGAAAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGGGTGGTCCAAGAAATGGCACACATAGCTAACGGACGAGATACGGGGAATTGTGTGTCCCTTCTCCGAGTGAATAGTGCAAATTCGAGCCAAAGCAATATGTTGATACTGCAAGAGAGCTGCACCGACTCAACGGGGTCTTTCGTCATATATGCTCCTGTAGATATAGTAGCCATGAACGTGGTGCTGAATGGAGGGGATCCTGATTACGTGGCACTTCTTCCTTCGGGTTTTGCTATCCTACCCGATGGCACCACGCCTCATGGAGGTGCCATCGTTGAAACAGGCCACGGCGGATCCCTTTTGACCGTTGCTTTTCAAATCTTGGTTGATTCCGTACCCACTGCTAAGCTCTCTCTTGGATCTGTCGCCACCGTCAACAACCTTATTGCCTGCACTGTGGAGAGAATTAAGGCTTCTTTATCCTGCGAAGCTGCTTGA 2205 0.5147 MFQQPNMMEGQLLPALDMAPNTSESDIPRIRDDDFDTATKSGSENQENGASGDDQDQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSHLRAENEKLRADNMRYREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPSSVPPRPLELGVGGGYGGQAGIAGGTGDMYGGAGDLLRSISGLTEADKPMIIELAVAAMEELVRMAQMGEPLWMTTLDGSTTVLNEEEYMRSFPRGIGPKPSDLKCEASRETALVIMNHINLVEILMDVNQWSTVFSGIVSRAMTMEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDHLSTAPVKCRRRPSGCLIQEMPNGYSKVTWIEHVEVDDRGVHSLYKQLVSSGHAFGAKRWVATLDRQCERLASAMASNIPTADVGVITNQDGRRSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPERVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTPHGGAIVETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral447g00003 734 SMART HOX_1 59 122 IPR001356 GO:0003677
Pral447g00003 734 MobiDBLite consensus disorder prediction 1 69 - -
Pral447g00003 734 ProSiteProfiles START domain profile. 247 478 IPR002913 GO:0008289
Pral447g00003 734 SUPERFAMILY Homeodomain-like 50 118 IPR009057 -
Pral447g00003 734 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Pral447g00003 734 SUPERFAMILY Bet v1-like 248 477 - -
Pral447g00003 734 Coils Coil 112 144 - -
Pral447g00003 734 Pfam START domain 257 475 IPR002913 GO:0008289
Pral447g00003 734 Gene3D - 325 472 IPR023393 -
Pral447g00003 734 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Pral447g00003 734 MobiDBLite consensus disorder prediction 26 40 - -
Pral447g00003 734 SUPERFAMILY Bet v1-like 495 726 - -
Pral447g00003 734 Gene3D - 46 135 - -
Pral447g00003 734 CDD START_ArGLABRA2_like 251 474 - -
Pral447g00003 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 729 IPR042160 -
Pral447g00003 734 FunFam Homeobox-leucine zipper protein GLABRA 2 256 474 - -
Pral447g00003 734 Pfam Homeodomain 61 117 IPR001356 GO:0003677
Pral447g00003 734 CDD homeodomain 61 119 IPR001356 GO:0003677
Pral447g00003 734 SMART START_1 256 475 IPR002913 GO:0008289
Pral447g00003 734 FunFam Homeobox-leucine zipper protein HDG1 46 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral447g00003 Pral-Chr447 23077 27940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral447g00003 1 734 Homeobox Transcription Factor Family AT1G05230 78.706 0.0 1150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral447g00003 START 2.4e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral447g00003 K09338 - gmx:100809556 1273.84