Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4472g00005 ATGAGTCACTCGGACATTGAAAGTATTGATGAATCTATTATAAATTGGGAACAAGCTCTGAGTCAGTATGAAACGGTGATGTGCTCGGGTACTGAGACTATGCAAATAAAAGCCATGACGAAGCTAGCCCGTCTCTCTAAACATGCCCCTGAGGGTTTATTAGTTCGCATTATACCCCATCTCATTGAGAATCTCGATGACTACCATTCAGTTAATTCAGACTGTTCTCTTCAAAAGGCTTCTGCTTATTGCTTAAAATGTATAGCTTGTAGAGGTGATGGTGGGTTGGCAAAGGAAATAGGTAGACTTGATGGAGCAAATCCTTTGTTATGGTGGTTGTCACATTCTAATGGCGAGTTTCAAGTAGTCCTGATAAAATGTTTGCTCGTTCTTGTTACTTTCTGTAATTCAAGTCGTGCAGTTGTCGCTGGTAATGAAGGCGTAGAAATTATCATTAGTTTGTTAAATTCTTATACAGATGATGTTAGACTTTACCTGTTGGAAATTTTGAGTGCATTAGCATTGCTGAGGGATGTTAGGAGGGCACTCACTAGATTAGGAAGTCTTAAATTTCTTGTGGAGGCTGCTAGCTGTGGTAGCATGGTTTCTCGGGAAAGAGCTTGTCAAGCAATCGGGTTACTTGGTGTCCCAAGACGGGCCAGGCGTACACTAGTTGAACTAGGAGTGATTCCAGTACTTGTTGACTGTCTTCGTGATGGAGACCACATCATGAAACTTGTGGCCGGTAATGCGCTTGGTGTGATCTCTGCTCATATTGATTATAGTAGATTAGTTGGTCAATCTGGGATTATCAGTCTCTATGCTGAGCTTCTTCAAGGACCTGACCCTTCTGGTAAGGAGATTGCTGAGGACGTATTTTGTATATTGGCTGTTGCTGAGGAGAATGCTGTTGAAATCACCAGGCACTTGGTGAGAATTCTTAGAGAAGGTGATGATGAATCAAAGGCTTCTGCTGCTGATGTGTTATGGGATCTGGCAAGTTACAAGCACGCAACATCTATGGTCCGGGAGTCAGGTGTGATTCCAATTCTGGTTGAGCGACTGGAGAGTGAAAATGAAGAGATAAAGCAGAACGTCTCTGGGGCATGTGCTCAACTGAGCTATGATGAGGCAGATAGAATGGCACTTGCTGAAGCAGGGGCAATCCCAATTCTCATCGAAATGATGCTGCATGATGAGTTGGAGGAAGTAAGGGATAATGCTGCTGAGGCTCTTGTCAACTTTGCTGAGGATCCTTTGTACTGTGATAGAGTATCTGATGCAATTAGTGTTCCTTCATTTAGAGATATGCAAAACAGATTACTTCACATTCGTGCTTCAAATGAGCATATGGCTAGATCGTTACGGAGAATGACTGATTGGCAGCTCACATGGAACCCTGATCTTGTTTAA 1413 0.4282 MSHSDIESIDESIINWEQALSQYETVMCSGTETMQIKAMTKLARLSKHAPEGLLVRIIPHLIENLDDYHSVNSDCSLQKASAYCLKCIACRGDGGLAKEIGRLDGANPLLWWLSHSNGEFQVVLIKCLLVLVTFCNSSRAVVAGNEGVEIIISLLNSYTDDVRLYLLEILSALALLRDVRRALTRLGSLKFLVEAASCGSMVSRERACQAIGLLGVPRRARRTLVELGVIPVLVDCLRDGDHIMKLVAGNALGVISAHIDYSRLVGQSGIISLYAELLQGPDPSGKEIAEDVFCILAVAEENAVEITRHLVRILREGDDESKASAADVLWDLASYKHATSMVRESGVIPILVERLESENEEIKQNVSGACAQLSYDEADRMALAEAGAIPILIEMMLHDELEEVRDNAAEALVNFAEDPLYCDRVSDAISVPSFRDMQNRLLHIRASNEHMARSLRRMTDWQLTWNPDLV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4472g00005 470 Gene3D - 308 434 IPR011989 -
Pral4472g00005 470 Gene3D - 7 305 IPR011989 -
Pral4472g00005 470 SMART arm_5 376 417 IPR000225 GO:0005515
Pral4472g00005 470 SMART arm_5 217 257 IPR000225 GO:0005515
Pral4472g00005 470 SMART arm_5 135 175 IPR000225 GO:0005515
Pral4472g00005 470 SMART arm_5 291 334 IPR000225 GO:0005515
Pral4472g00005 470 SMART arm_5 335 375 IPR000225 GO:0005515
Pral4472g00005 470 SUPERFAMILY ARM repeat 18 174 IPR016024 -
Pral4472g00005 470 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 310 428 - -
Pral4472g00005 470 Coils Coil 352 372 - -
Pral4472g00005 470 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
Pral4472g00005 470 Pfam HEAT repeats 308 412 - -
Pral4472g00005 470 Coils Coil 398 418 - -
Pral4472g00005 470 SUPERFAMILY ARM repeat 146 424 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4472g00005 Pral-Chr4472 51473 53618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4472g00005 178 432 U-box Gene Family AT2G23140 25.660 9.47e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4472g00005 - - gmx:100819735 595.119