Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4472g00003 ATGCATGAGTCTCAAGTGATCCACCATAACCATCAAATGGAGCTTCTCGATTCCTCAAAGTTGGAAATGTCTCCCGAAACGAGCTTTTTTCTCCAACCCATTTTCACTCACGGGCTTTCTTGTTCACTGCACCTGGCGCTACTACTTGTGTTACTGATAACATGGGCATGTCACAAAACCAAGGTTCGAAACAGAGAAACTGGAAGAATAGGAGTTTCCAATACTGCTGTTTTGTACTACAGACAGACTCTTTTCTGTTGTTTAATTGTTTTTGCTTTTAACCTTGTGCTGTCCGTACTAAACTTCTTTTTCTGGTACAAGAACGACAACTTTGATGAAATTGTTATTGCTGTGGATTTTGTGATAAAAACTGTTGCCTGGGGTGCTCTTTGTGTCTACTTGTATTCTAGACTCTCCAGTTCAGGGGAACAAGACTTCCCCAGATTCTTGAGAATTTGGTGCTGGGCTTACTCCTTTGTTTGCTGTTCTTGCCTTGTAATAGATTTTGTGCTCTACAGAAAACATGTTTTCCTCCCAATAATATACCTTATTTCTGATATTGGTTCCACTCTTTCGGGTCTGTTTTTCTGTTATGTGGGATTTTCAGCAAGCAATGAGGCAAAACGCGTCCTTCTTGAAGAACCCCTCTTGAGTAGTGATTACAGGGAAAGCAATAGCTATGAGTGCTATAAGAACACCCCTTACTCAAAAGCTGGATTTTTCAGTATTGTTACTTTCTCATGGATGAGTACTCTAATTGCTGTTGGATATAAGAAAACTTTAGGCCTTGAGGATCTCCCTTTGCTCTCTAGCCATGACAGTGTATACGGGACATTTCCAACATTTAGAAAAAACCTTGAATCAGTGTGTAGTGATGATCTTAGCAGAGTGACCACTATTAAACTGGTGAAGGCTTTAATCTACTCTACATGGAAAGGGATTCTCTCATCAGCTATATTTGCATTCTTTTACACATGTGCTTCTTATGTTGGTCCCTTTCTGATTGACGTATTTGTTGAATATCTGAATGGACAAGAAAGTTTTAAAAATGAGGGTTATATTTTGACAGTGGCATTCCTCAGTGGGAAACTTGTGGAGTGCCTTGCACAGAGGCACTGGATGTTTAGGTTCCAGCAAGTTGGGGTTAGGTTTCAGTCAATGTTAGTGGCAATGATCTATGCAAAAGGATTGACCCTTTCATGTCAATCAAAGGAGGGTCGAACTAGTGGGGAGATCATCAACTTAATGACTGTTGATGCTGCTAGGATTGGTGAGTTTTGTTGGTACATGCATGATCCATGGATGGCTGTTCTACAAGTAACTTTAGCTTTAGTTGTTCTATATAGAAGTGTTGGGATTGCTTCATTATCTGCTTTTGCTGCTACTGTTTTAATGATGCTGGCAAACTTGCCATTGGGGTCACTGCAAGAGAAGTTTCAGAGAAAGTTAATGGAGTCAAAAGACACAAGAATGAAGGCCACCACTGAGATTCTAAAGAACATGAGGATTCTAAAACTGCAGGCATGGGAGATGAAGTTCCTGTCAAGAGTTATTGAGATTAGGAACACTGAGACAGGATGGCTAAAGAAATTTTTATTCAGTTCAGGAATGACAAGATTCCTCTTCTCTTCTGCCCCAACTTTCATTGCTATGGTTACTTTTGGTACTTGTATTCTCATAGGAATCCCACTTGACTCAGGCAAGATCTTAGCTGCATTGGCAACTTTCAGAATTCTGCAGCAGCCCATATCTAACCTTCCTGACACAATCTCAATGATAGCACAAACTAAGGTTTCCCTCGATAGGATTGCATCATTCCTTTGTCTCCAGGAAATACAGTCTGATGTTGTAGAGAGGCTTCCTCGGGGTAGTTCTGATACAGCAATTGAGATAGTAGATGGGAACTTCTCTTGGGATTTGTCTTCACCTGTTCCTACCTTGCAAAATATAAACATCAACATAATCCATGGCTTCAGGGTTGCAGTTTGTGGTACTGTTGGTTCAGGAAAGTCAAGTCTACTTTCTTGTATACTAGGAGAAGTATCGAAGCTCTCTGGGACATTGAAGATGTGTGGTACAAAGGCTTATGTTGCTCAGTCCCCTTGGATACAAGGTGGAAAGATAGAGGAGAACGTACTATTTGGGAAAGAGATGGATAGGGAAAAATATGAGAAGATTTTAGAAGCATGTTCCTTGAAAAGAGACCTAGAAATTCTTCCTTTTGGTGATCAAACTGTTATTGGAGAGAGAGGCATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCTCGTGCTCTTTACCAAGATGCTGATATATATATTCTTGATGATCCTTTCAGTGCCGTGGATGCCCATACCGGATCCCACCTGTTTAAGGAGTGTTTGCTTGGCCTTTTGAGTTCAAAAACAGTGTTATATGTGACTCATCAACTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAAAGATGGCAAGATAACTCAATCAGGTAAGTACAATGACATACTCAACTCAGGCACTGATTTTATGGAGCTTGTTGGAGCACATAGAGAAGCCTTATCTGCAATCAATTCGTTAGAGAGAAAACCCACCTTTAGAGAAACTAGTACCACTGCGAAAGAGACAGACTCATTAAGTGCATTTGGACTTGAGGAAGAAGTTGAAAACAAAGATGTTCAAAAAGAAGATGATAACCGTGGGCCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAAAAGGGCAAAGTTGGGTTTGAAGTTTACTGGAAGTACATTACAACAGCATATGGAGGAGCTCTTGTACCTTTCATATTACTCTTGCATGTGCTTTTTCAGGTTTTTCAAATTGGAAGCAATTATTGGATGGCATTGGCAGCTCCTGTATCGGCAACTACAGAGCCTCCTGTTGGGAGCTTTACACTTTTGCTTGTCTATGTAGCTTTGGCCATTGCAAGTTCTTTCTGCAACATGGCTAGAACAATGCTTGTGTTTGTAGCTGGATATAAGACAGCCACTACACTCTTCAATAAACTGCACGTGTGCTTCTTCCGAGCCCCTATGTCGTTTTTTGATTCTACACCAAGTGGACGAATCCTAAATAGAGCTTCAACAGACCAAAGTGCAGTAGATATGAGCATTCCAATTACTGTAGCAGGAGTTGCCTTCTGCCTTATTCAGCTCTTGGCAAATATTGCTGTGATGTCTCAAATTGCATGGCAGGTTTTTTTAGTATTTATTCCTGTGGTTGCAGCTTGCATATGGTACCAGCGATACTACTCAGAATCAGCGCGTGAACTATCCCGTTTGGTTGGTACGTGTGAAGCTCCAGTTATACAGCATTTTTCAGAAACCATTTCAGGATCAATGACCATCAGAAGTTTTGACCAAGAAGCGAGATTTCAGGATACAAACATGAAACTGATAGACAGATATTCCAAGCCCAAGTTATACAGTACTGCTGCAATGGAATGGCTATGCTTCCGATTGGATATGTTATCTTCTATCACATTTGCCTTCAGTTTGGTTTTCTTGATATCTTTTCCAAATGCAATTAGTGCTCCTGGCATTGCTGGCTTGGCTGTGACATATGGGTTTAATCTAAACATGCTGCAAGCTCAATTAATTTGGACGCTTTGCAATATGGAGAATAAAATTATATCAGTAGAAAGAATATTTCAGTATACTAACATCCCAAGCGAGCCTCCTCTTGTAATTGAAGAAAACAGACCAGATTGTTCATGGCCATCATATGGGGAGGTTCATATCCAGGATTTACAGGTCCGATATGCTCCTCACTTGCCTCTTGTGCTGCGAGGTCTTACATGCACATTCAATGCTGGGGTAAAAACAGGCATTGTGGGGAGAACTGGAAGTGGAAAATCAACTCTGGTGCAAACACTATTCAGGCTCATTGAACCTACAACTGGTCAGATACTAATAGACGGCATCGGCATCTCTTTGACTGGGCTTCACGATTTAAGGTCTAGACTTAGCATTATTCCTCAAGATCCAACTATGTTTCAAGGGACTGTAAGAAGTAATTTAGACCCGCTTGAAGAGTACACTGATGAACAGATTTGGGAGGCTCTAGCTATGTGCCAACTTGGAGATGAAGTCAGGAAGAAGGAAGGAAGGCTTGATTCCATTGTCACTGAGAATGGAGAAAATTGGAGTATGGGTCAGAGGCAACTGGTTTGCCTCGGCCGTGTTCTACTTAAAAAAAGCAGGATTTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACTGCTACAGATAACATTATCCAACAGACCCTGAAGCAGCATTTCTCAGAATGTACAGTTATAACCATTGCACACAGAATAACTTCTATCCTTGACAGTGACATGGTTTTGGTTCTGAGCCAAGGGCTTATTGAGGAATATGACTCACCAAACAGATTGTTGAAGAACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACTCTCGTAGGTCCAACTCGGGTTTTGAAGCTTAG 4512 0.4094 MHESQVIHHNHQMELLDSSKLEMSPETSFFLQPIFTHGLSCSLHLALLLVLLITWACHKTKVRNRETGRIGVSNTAVLYYRQTLFCCLIVFAFNLVLSVLNFFFWYKNDNFDEIVIAVDFVIKTVAWGALCVYLYSRLSSSGEQDFPRFLRIWCWAYSFVCCSCLVIDFVLYRKHVFLPIIYLISDIGSTLSGLFFCYVGFSASNEAKRVLLEEPLLSSDYRESNSYECYKNTPYSKAGFFSIVTFSWMSTLIAVGYKKTLGLEDLPLLSSHDSVYGTFPTFRKNLESVCSDDLSRVTTIKLVKALIYSTWKGILSSAIFAFFYTCASYVGPFLIDVFVEYLNGQESFKNEGYILTVAFLSGKLVECLAQRHWMFRFQQVGVRFQSMLVAMIYAKGLTLSCQSKEGRTSGEIINLMTVDAARIGEFCWYMHDPWMAVLQVTLALVVLYRSVGIASLSAFAATVLMMLANLPLGSLQEKFQRKLMESKDTRMKATTEILKNMRILKLQAWEMKFLSRVIEIRNTETGWLKKFLFSSGMTRFLFSSAPTFIAMVTFGTCILIGIPLDSGKILAALATFRILQQPISNLPDTISMIAQTKVSLDRIASFLCLQEIQSDVVERLPRGSSDTAIEIVDGNFSWDLSSPVPTLQNININIIHGFRVAVCGTVGSGKSSLLSCILGEVSKLSGTLKMCGTKAYVAQSPWIQGGKIEENVLFGKEMDREKYEKILEACSLKRDLEILPFGDQTVIGERGINLSGGQKQRVQIARALYQDADIYILDDPFSAVDAHTGSHLFKECLLGLLSSKTVLYVTHQLEFLPDADLILVMKDGKITQSGKYNDILNSGTDFMELVGAHREALSAINSLERKPTFRETSTTAKETDSLSAFGLEEEVENKDVQKEDDNRGPKGQLVQEEEREKGKVGFEVYWKYITTAYGGALVPFILLLHVLFQVFQIGSNYWMALAAPVSATTEPPVGSFTLLLVYVALAIASSFCNMARTMLVFVAGYKTATTLFNKLHVCFFRAPMSFFDSTPSGRILNRASTDQSAVDMSIPITVAGVAFCLIQLLANIAVMSQIAWQVFLVFIPVVAACIWYQRYYSESARELSRLVGTCEAPVIQHFSETISGSMTIRSFDQEARFQDTNMKLIDRYSKPKLYSTAAMEWLCFRLDMLSSITFAFSLVFLISFPNAISAPGIAGLAVTYGFNLNMLQAQLIWTLCNMENKIISVERIFQYTNIPSEPPLVIEENRPDCSWPSYGEVHIQDLQVRYAPHLPLVLRGLTCTFNAGVKTGIVGRTGSGKSTLVQTLFRLIEPTTGQILIDGIGISLTGLHDLRSRLSIIPQDPTMFQGTVRSNLDPLEEYTDEQIWEALAMCQLGDEVRKKEGRLDSIVTENGENWSMGQRQLVCLGRVLLKKSRILVLDEATASVDTATDNIIQQTLKQHFSECTVITIAHRITSILDSDMVLVLSQGLIEEYDSPNRLLKNKSSSLAQLVAEYSRRSNSGFEA 1503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4472g00003 1503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1257 1491 IPR003439 GO:0005524
Pral4472g00003 1503 FunFam ABC transporter C family member 5 614 861 - -
Pral4472g00003 1503 Pfam ABC transporter 647 781 IPR003439 GO:0005524
Pral4472g00003 1503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 317 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4472g00003 1503 Gene3D - 1240 1493 IPR027417 -
Pral4472g00003 1503 CDD ABC_6TM_ABCC_D2 938 1232 IPR044726 GO:0140359
Pral4472g00003 1503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1220 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4472g00003 1503 Gene3D - 611 873 IPR027417 -
Pral4472g00003 1503 FunFam ABC transporter C family member 3 1240 1492 - -
Pral4472g00003 1503 CDD ABCC_MRP_domain2 1255 1475 - -
Pral4472g00003 1503 FunFam ABC transporter C family member 10 298 611 - -
Pral4472g00003 1503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 851 IPR027417 -
Pral4472g00003 1503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 852 IPR003439 GO:0005524
Pral4472g00003 1503 CDD ABCC_MRP_domain1 629 829 - -
Pral4472g00003 1503 SUPERFAMILY ABC transporter transmembrane region 938 1239 IPR036640 GO:0005524|GO:0016020
Pral4472g00003 1503 Pfam ABC transporter 1274 1422 IPR003439 GO:0005524
Pral4472g00003 1503 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Pral4472g00003 1503 MobiDBLite consensus disorder prediction 890 912 - -
Pral4472g00003 1503 FunFam ABC transporter C family member 5 901 1238 - -
Pral4472g00003 1503 SMART AAA_5 1283 1468 IPR003593 GO:0016887
Pral4472g00003 1503 SMART AAA_5 656 829 IPR003593 GO:0016887
Pral4472g00003 1503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1249 1483 IPR027417 -
Pral4472g00003 1503 Gene3D ABC transporter type 1, transmembrane domain 900 1238 IPR036640 GO:0005524|GO:0016020
Pral4472g00003 1503 Gene3D ABC transporter type 1, transmembrane domain 293 610 IPR036640 GO:0005524|GO:0016020
Pral4472g00003 1503 CDD ABC_6TM_ABCC_D1 317 603 IPR044746 GO:0140359
Pral4472g00003 1503 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1493 - -
Pral4472g00003 1503 Pfam ABC transporter transmembrane region 317 582 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4472g00003 1503 Pfam ABC transporter transmembrane region 941 1182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4472g00003 1503 SUPERFAMILY ABC transporter transmembrane region 306 607 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4472g00003 Pral-Chr4472 12501 18607 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4472g00003 611 845 Calmodulin-binding Proteins AT2G36910 31.641 1.87e-25 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4472g00003 - K05666 gmx:106794105 2127.06