Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4472g00001 ATGCATGAGTCTCAAGTGATCCACCATAACCATCAAATGGAGCTTCTCGATTCCTCAAAGTTGGAAATGTCTCCCGAAACGAGCTTTTTTCTCCAACCCATTTTCACTCACGGGCTTTCTTGTTCACTGCACCTGGCGCTACTACTTGTGTTACTGATAACATGGGCATGTCACAAAACCAAGGTTCGAAACAGAGAAACTGGAAGAATAGGAGTTTCCAATACTGCTGTTTTGTACTACAGACAGACTCTTTTCTGTTGTTTAATTGTTTTTGCTTTTAACCTTGTGCTGTCCGTACTAAACTTCTTTTTCTGGTACAAGAACGACAACTTTGATGAAATTGTTATTGCTGTGGATTTTGTGATAAAAACTGTTGCCTGGGGTGCTCTTTGTGTCTACTTGTATTCTAGACTCTCCAGTTCAGGGGAACAAGACTTCCCCAGATTCTTGAGAATTTGGTGCTGGGCTTACTCCTTTGTTTGCTGTTCTTGCCTTGTAATAGATTTTGTGCTCTACAGAAAACATGTTTTCCTCCCAATAATATACCTTATTTCTGATATTGGTTCCACTCTTTCGGGTCTGTTTTTCTGTTATGTGGGATTTTCAGCAAGCAATGAGGCAAAACGCGTCCTTCTTGAAGAACCCCTCTTGAGTAGTGATTACAGGGAAAGCAATAGCTATGAGTGCTATAAGAACACCCCTTACTCAAAAGCTGGATTTTTCAGTATTGTTACTTTCTCATGGATGAGTACTCTAATTGCTGTTGGATATAAGAAAACTTTAGGCCTTGAGGATCTCCCTTTGCTCTCTAGCCATGACAGTGTATACGGGACATTTCCAACATTTAGAAAAAACCTTGAATCAGTGTGTAGTGATGATCTTAGCAGAGTGACCACTATTAAACTGGTGAAGGCTTTAATCTACTCTACATGGAAAGGGATTCTCTCATCAGCTATATTTGCATTCTTTTACACATGTGCTTCTTATGTTGGTCCCTTTCTGATTGACGTATTTGTTGAATATCTGAATGGACAAGAAAGTTTTAAAAATGAGGGTTATATTTTGACAGTGGCATTCCTCAGTGGGAAACTTGTGGAGTGCCTTGCACAGAGGCACTGGATGTTTAGGTTCCAGCAAGTTGGGGTTAGGTTTCAGTCAATGTTAGTGGCAATGATCTATGCAAAAGGATTGACCCTTTCATGTCAATCAAAGGAGGGTCGAACTAGTGGGGAGATCATCAACTTAATGACTGTTGATGCTGCTAGGATTGGTGAGTTTTGTTGGTACATGCATGATCCATGGATGGCTGTTCTACAAGTAACTTTAGCTTTAGTTGTTCTATATAGAAGTGTTGGGATTGCTTCATTATCTGCTTTTGCTGCTACTGTTTTAATGATGCTGGCAAACTTGCCATTGGGGTCACTGCAAGAGAAGTTTCAGAGAAAGTTAATGGAGTCAAAAGACACAAGAATGAAGGCCACCACTGAGATTCTAAAGAACATGAGGATTCTAAAACTGCAGGCATGGGAGATGAAGTTCCTGTCAAGAGTTATTGAGATTAGGAACACTGAGACAGGATGGCTAAAGAAATTTTTATTCAGTTCAGGAATGACAAGATTCCTCTTCTCTTCTGCCCCAACTTTCATTGCTATGGTTACTTTTGGTACTTGTATTCTCATAGGAATCCCACTTGACTCAGGCAAGATCTTAGCTGCATTGGCAACTTTCAGAATTCTGCAGCAGCCCATATCTAACCTTCCTGACACAATCTCAATGATAGCACAAACTAAGGTTTCCCTCGATAGGATTGCATCATTCCTTTGTCTCCAGGAAATACAGTCTGATGTTGTAGAGAGGCTTCCTCGGGGTAGTTCTGATACAGCAATTGAGATAGTAGATGGGAACTTCTCTTGGGATTTGTCTTCACCTGTTCCTACCTTGCAAAATATAAACATCAACATAATCCATGGCTTCAGGGTTGCAGTTTGTGGTACTGTTGGTTCAGGAAAGTCAAGTCTACTTTCTTGTATACTAGGAGAAGTATCGAAGCTCTCTGGGACATTGAAGATGTGTGGTACAAAGGCTTATGTTGCTCAGTCCCCTTGGATACAAGGTGGAAAGATAGAGGAGAACGTACTATTTGGGAAAGAGATGGATAGGGAAAAATATGAGAAGATTTTAGAAGCATGTTCCTTGAAAAGAGACCTAGAAATTCTTCCTTTTGGTGATCAAACTGTTATTGGAGAGAGAGGCATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCTCGTGCTCTTTACCAAGATGCTGATATATATATTCTTGATGATCCTTTCAGTGCCGTGGATGCCCATACCGGATCCCACCTGTTTAAGGAGTGTTTGCTTGGCCTTTTGAGTTCAAAAACAGTGTTATATGTGACTCATCAACTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAAAGATGGCAAGATAACTCAATCAGGTAAGTACAATGACATACTCAACTCAGGCACTGATTTTATGGAGCTTGTTGGAGCACATAGAGAAGCCTTATCTGCAATCAATTCGTTAGAGAGAAAACCCACCTTTAGAGAAACTAGTACCACTGCGAAAGAGACAGACTCATTAAGTGCATTTGGACTTGAGGAAGAAGTTGAAAACAAAGATGTTCAAAAAGAAGATGATAACCGTGGGCCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAAAAGGGCAAAGTTGGGTTTGAAGTTTACTGGAAGTACATTACAACAGCATATGGAGGAGCTCTTGTACCTTTCATATTACTCTTGCATGTGCTTTTTCAGGTTTTTCAAATTGGAAGCAATTATTGGATGGCATTGGCAGCTCCTGTATCGGCAACTACAGAGCCTCCTGTTGGGAGCTTTACACTTTTGCTTGTCTATGTAGCTTTGGCCATTGCAAGTTCTTTCTGCAACATGGCTAGAACAATGCTTGTGTTTGTAGCTGGATATAAGACAGCCACTACACTCTTCAATAAACTGCACGTGTGCTTCTTCCGAGCCCCTATGTCGTTTTTTGATTCTACACCAAGTGGACGAATCCTAAATAGAGCTTCAACAGACCAAAGTGCAGTAGATATGAGCATTCCAATTACTGTAGCAGGAGTTGCCTTCTGCCTTATTCAGCTCTTGGCAAATATTGCTGTGATGTCTCAAATTGCATGGCAGGTTTTTTTAGTATTTATTCCTGTGGTTGCAGCTTGCATATGGTACCAGGCATTGCTGGCTTGGCTGTGA 3300 0.4076 MHESQVIHHNHQMELLDSSKLEMSPETSFFLQPIFTHGLSCSLHLALLLVLLITWACHKTKVRNRETGRIGVSNTAVLYYRQTLFCCLIVFAFNLVLSVLNFFFWYKNDNFDEIVIAVDFVIKTVAWGALCVYLYSRLSSSGEQDFPRFLRIWCWAYSFVCCSCLVIDFVLYRKHVFLPIIYLISDIGSTLSGLFFCYVGFSASNEAKRVLLEEPLLSSDYRESNSYECYKNTPYSKAGFFSIVTFSWMSTLIAVGYKKTLGLEDLPLLSSHDSVYGTFPTFRKNLESVCSDDLSRVTTIKLVKALIYSTWKGILSSAIFAFFYTCASYVGPFLIDVFVEYLNGQESFKNEGYILTVAFLSGKLVECLAQRHWMFRFQQVGVRFQSMLVAMIYAKGLTLSCQSKEGRTSGEIINLMTVDAARIGEFCWYMHDPWMAVLQVTLALVVLYRSVGIASLSAFAATVLMMLANLPLGSLQEKFQRKLMESKDTRMKATTEILKNMRILKLQAWEMKFLSRVIEIRNTETGWLKKFLFSSGMTRFLFSSAPTFIAMVTFGTCILIGIPLDSGKILAALATFRILQQPISNLPDTISMIAQTKVSLDRIASFLCLQEIQSDVVERLPRGSSDTAIEIVDGNFSWDLSSPVPTLQNININIIHGFRVAVCGTVGSGKSSLLSCILGEVSKLSGTLKMCGTKAYVAQSPWIQGGKIEENVLFGKEMDREKYEKILEACSLKRDLEILPFGDQTVIGERGINLSGGQKQRVQIARALYQDADIYILDDPFSAVDAHTGSHLFKECLLGLLSSKTVLYVTHQLEFLPDADLILVMKDGKITQSGKYNDILNSGTDFMELVGAHREALSAINSLERKPTFRETSTTAKETDSLSAFGLEEEVENKDVQKEDDNRGPKGQLVQEEEREKGKVGFEVYWKYITTAYGGALVPFILLLHVLFQVFQIGSNYWMALAAPVSATTEPPVGSFTLLLVYVALAIASSFCNMARTMLVFVAGYKTATTLFNKLHVCFFRAPMSFFDSTPSGRILNRASTDQSAVDMSIPITVAGVAFCLIQLLANIAVMSQIAWQVFLVFIPVVAACIWYQALLAWL 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4472g00001 1099 Gene3D - 611 874 IPR027417 -
Pral4472g00001 1099 SUPERFAMILY ABC transporter transmembrane region 925 1097 IPR036640 GO:0005524|GO:0016020
Pral4472g00001 1099 Pfam ABC transporter 647 781 IPR003439 GO:0005524
Pral4472g00001 1099 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Pral4472g00001 1099 FunFam ABC transporter C family member 5 614 861 - -
Pral4472g00001 1099 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 317 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4472g00001 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 851 IPR027417 -
Pral4472g00001 1099 MobiDBLite consensus disorder prediction 890 912 - -
Pral4472g00001 1099 Pfam ABC transporter transmembrane region 317 582 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4472g00001 1099 Pfam ABC transporter transmembrane region 941 1096 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4472g00001 1099 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1094 - -
Pral4472g00001 1099 SUPERFAMILY ABC transporter transmembrane region 306 607 IPR036640 GO:0005524|GO:0016020
Pral4472g00001 1099 Gene3D ABC transporter type 1, transmembrane domain 900 1099 IPR036640 GO:0005524|GO:0016020
Pral4472g00001 1099 Gene3D ABC transporter type 1, transmembrane domain 293 610 IPR036640 GO:0005524|GO:0016020
Pral4472g00001 1099 SMART AAA_5 656 829 IPR003593 GO:0016887
Pral4472g00001 1099 CDD ABC_6TM_ABCC_D1 317 603 IPR044746 GO:0140359
Pral4472g00001 1099 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 852 IPR003439 GO:0005524
Pral4472g00001 1099 CDD ABCC_MRP_domain1 629 829 - -
Pral4472g00001 1099 FunFam ABC transporter C family member 10 298 611 - -
Pral4472g00001 1099 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1099 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4472g00001 Pral-Chr4472 12497 17338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4472g00001 629 886 Calmodulin-binding Proteins AT2G36910 28.058 4.26e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4472g00001 - K05666 gmx:106794105 1450.26