Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4471g00039 ATGGATTATCTGTACACAATAAAAGAGGAGTACTTGGAACCATCTTCATCTGAATTAGGAGATGAGCTAGCAATGGTTCTACCTCCACAGCCAATGCGGGGACTTCATGAAACAGGACCACCTCCATTCCTCACCAAGACGTTTGAAATGGTGGACGACCCTTCAACCGATCACATGGTCTCGTGGAGCAGAGGAGGAACAAGTTTTGTTGTTTGGGATCCATGCTCTTTCTCTACCAATCTCCTTCCTAGATACTTCAAGCACAATAATTTCTCAAGCTTTGTCAGGCAATTGAACACTTACGGTTTTAGAAAAATTGATCCAGAAAGATGGGAGTTTTCAAACGAAGACTTCATCAGAGGGCACAAGCATCTACTTAGGAACATACGAAGAAGGAGAGCACCTTCTCAGGTTACTTCATCCTCCCAAGAACCAGGTCATTGCGTTGAAGTTGGTAGGTTTGGAGTAGATGAAGAAGTTCTGCGTTTAAGGCGTGACAAGCAAGTGTTAATGATGGAGCTTGGGAAGCTTAGGCGGCAGCAGCAGAAAACCGGAGCCTACCTTCAGGCAATGGAGCAGAGGTTACGAGGCATAGAAATGAAGCAGCAACAAATGATGGTCTTCTTAGCTAGAGCATTGAAAAATCCAACTTTTCTCCACCAACTACTTCAGCAGAGTAATAGAAAGGAGCTGGAAGAAGCCATGACTAAGAAAAGAAGATCAGTTGAGCAAGCACCAATTTATATTGCTGAATCAAGCAGTGAAAGTGAGGGAAGGAAACCTGTTAAAGTTGAAGTGTCCGAGCTTGAGGTTCTAGCTATGGAAATGCAAGGTCTTGGTAGGGGTAAGAAAGAACCGGAAGCACTTGGATCGCCAGAGAGGCTGGACAACGAACTTGATGAAGGATTCTGGGAAGAGTTTTTCAGTGAAAATGTTGAGGGTGAACTATACATTCCAAGCGATGAAGGTGAAGATGAAGATGTAGATATCGACGTCTTGGTCAAGCGCTTAGGCTACATGGGTTCAGGTCCTAAGTGA 1038 0.4432 MDYLYTIKEEYLEPSSSELGDELAMVLPPQPMRGLHETGPPPFLTKTFEMVDDPSTDHMVSWSRGGTSFVVWDPCSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPERWEFSNEDFIRGHKHLLRNIRRRRAPSQVTSSSQEPGHCVEVGRFGVDEEVLRLRRDKQVLMMELGKLRRQQQKTGAYLQAMEQRLRGIEMKQQQMMVFLARALKNPTFLHQLLQQSNRKELEEAMTKKRRSVEQAPIYIAESSSESEGRKPVKVEVSELEVLAMEMQGLGRGKKEPEALGSPERLDNELDEGFWEEFFSENVEGELYIPSDEGEDEDVDIDVLVKRLGYMGSGPK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4471g00039 345 Gene3D - 35 133 IPR036388 -
Pral4471g00039 345 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4471g00039 345 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4471g00039 345 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4471g00039 345 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4471g00039 345 FunFam Heat shock transcription factor 1 36 133 - -
Pral4471g00039 345 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4471g00039 345 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4471g00039 345 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Pral4471g00039 345 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 258 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4471g00039 Pral-Chr4471 216878 219264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4471g00039 29 342 HSF AT3G22830 46.814 1.22e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral4471g00039 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4471g00039 K09419 - gmx:100794264 461.455