Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4471g00038 ATGTTTCCTGCGGCGATGTCCAATTCTACTACTTCTTTGTCCGTAGAATCCTCTGTCTCTTCTGCTACTAGACTTCATGACCTCTCTGGAGTAAACCCGGTCCTCCCCACAATTCCTCCTCAGCAGCCTCCAAAGATCAAGAAAAAGAGAAGCCTCCCCGGAAACCCAGACCCAGATGCAGAAGTGATAGCGTTATCCCCGAAGACTCTTTTGGCCACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAAAGAGACCAGAATCTTCAACTCCATAGGAGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAGAGCCTACGTTTGCCCCGAGCCTTCATGCGTTCATCACAACCCCTCGAGGGCTCTGGGGGACCTCACTGGAATCAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGCGAGAAATGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCGCACTCTAAGACCTGTGGAACTAGAGAATACAGATGTGATTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCAGAAGAAAGTGCGAGACTCTCAGTAAATCAACTAGCTTCCTCCGCCACGAACCCACTGGTCCAATCTCTCTTGCTGTATCCCAACCAACACAGCTTCCTCAATAATCCATGGAACCCGTCTCAAGAAAACCCTAACCCTAGCAACGTTATCCAGGTCAAGCCCGAAGCTCAACATTTCCAGATGCCTCCTTCGTTTCTTCAGGAACCTCCTCATCCTCACCACAAGAGCGCTCTGATAAACACAACCTTTAGGAACCCACAAATGCCCATGCAATCTTCCTCAAACGCTGCCACGTCAGCCCACCTTTCTGCCACCGCTCTCCTCCAAAAGGCTGCCACCGTCGGGGCCACCCCAATGACGCCCCAACCATCTCAGTCGCAAGCTCATCACCTGACTCCGCTTAGCATGAGCCAGTTTGGATCAGTGGATCAGCTCGAATCGGTGGTGCCTGGCTATATCAGAGGGTTCGCGACTCGGAATCTTAAGAATGAGCATCTGACGAGGGACTTCCTGGGTCTCACCGACGATGGCAACAACGGAGGCGACGGTGAGAACGCCGGTGCTGTCAACCTGAAGAATGTCATGACGTTCACGGGGGATGTATACGAACACCACCATCACCACTCGCTCTTCAGGTCCCGACAGGGTTTTGGATTCGTTGGGACTTCCAATGCCCCCGAGACGTGGAGCAATTATTAA 1311 0.5072 MFPAAMSNSTTSLSVESSVSSATRLHDLSGVNPVLPTIPPQQPPKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSVNQLASSATNPLVQSLLLYPNQHSFLNNPWNPSQENPNPSNVIQVKPEAQHFQMPPSFLQEPPHPHHKSALINTTFRNPQMPMQSSSNAATSAHLSATALLQKAATVGATPMTPQPSQSQAHHLTPLSMSQFGSVDQLESVVPGYIRGFATRNLKNEHLTRDFLGLTDDGNNGGDGENAGAVNLKNVMTFTGDVYEHHHHHSLFRSRQGFGFVGTSNAPETWSNY 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4471g00038 436 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Pral4471g00038 436 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 390 IPR031140 -
Pral4471g00038 436 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Pral4471g00038 436 MobiDBLite consensus disorder prediction 29 59 - -
Pral4471g00038 436 Gene3D Classic Zinc Finger 146 209 - -
Pral4471g00038 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Pral4471g00038 436 SMART c2h2final6 152 172 IPR013087 -
Pral4471g00038 436 SMART c2h2final6 76 98 IPR013087 -
Pral4471g00038 436 SMART c2h2final6 117 147 IPR013087 -
Pral4471g00038 436 Gene3D Classic Zinc Finger 56 125 - -
Pral4471g00038 436 Pfam Zinc finger, C2H2 type 76 98 IPR013087 -
Pral4471g00038 436 FunFam protein indeterminate-domain 12-like 55 123 - -
Pral4471g00038 436 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4471g00038 Pral-Chr4471 208118 212223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4471g00038 11 425 IDZ Gene Family AT4G02670 50.000 3.31e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4471g00038 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4471g00038 K25870 - qsa:O6P43_010584 523.087