Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4471g00005 ATGGCGAATCAGGTAGTCAAAGTGAAGAGGGAAACGATTGCAGCATGCATGACCTGCCCACTCTGCAACAAGTTGTTCAGGGAGGCCACCACTATATCTGAATGCCTGCATACGTTTTGCAGGAAGTGCATATATGACAAAATTACAGATGAGGAATTGGAATGCTGTCCAATATGCAATATTGATTTGGGCTGTGTTCCGCTGGAGAAATTGAGGCCAGACCATAGTTGGCAAGATGTAAGGGCTAAAATTTTCCCTTTGAAGAAAACAAAGGCAAAGGCACCAGAAGTTGTCCCCTCAGAACCATTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACCCCCAGAGTATCAACACAGGCAACCATGACAGGCAGAAGAACAAAGCCTACAAGGAAGGCTAGTGCTTTACGCTCCACTAGTTTTTCCATTGAAAAACCCATTGTAAAAGAGGAAGATTCAATCGAAGATCATCCAGAGAGTTCAAGCTCCCATGATACCTCCAACAAGGTTGCTCAGACTACTAGACAGAACTCGTCCCCTCATGATGCAAGCCAATCTGTTCCCAATAAGGAGAAAAATAATGGGGCTGAACATTGGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTGGTGGAGGTTGCAAGTAGAAGTAAATCTCTCAAGTCCAACATGCAAGGATGTGATGCTAAACAAGAACCTATTCAAATAAATGAGAATGATTCTCAAATACAAAAATCCAAAATTAAGGACATCAAACGAAAGTCAAAAGTTGAGGATGAAAAGATCGTCACAGATCCTGCTTCTACAGATACAGCAAAAGCCAATAAATTGCGTAGAAATCGCCGAAAAAAAGAACCTGTTGTGGGTGAATCAAGCATATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAAATGAAAGAAAGAACTGGTCCAATATGGTTCTCCTTAGTAGCTTCCGACGACCAGGACAGAGATGCACCACTACCTCAAATTCCTGCAAGTTACTTGAGAATAAAGGATGGAAACATGCCTGTCTCATTCATCCAGAAGTACCTAATGAAAAAATTAGATCTGACCAGTGAAGATGAGGTTGAGATTAAATGCATGGGACAACCAGTGGTCCCTACATTGCAACTAAATAACTTGGTTGACTTGTGGCTGCAAACAACATCAACATCACAGAGAATCCCAGCAGCCATTGGATCATCAGCAAAAGATTTTGTTATGGTCCTGACCTATGCTCGCAAGGCCCCGCCTCCTTGA 1290 0.4248 MANQVVKVKRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSWQDVRAKIFPLKKTKAKAPEVVPSEPLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASALRSTSFSIEKPIVKEEDSIEDHPESSSSHDTSNKVAQTTRQNSSPHDASQSVPNKEKNNGAEHWEAKLDLWKPLNCLVEVASRSKSLKSNMQGCDAKQEPIQINENDSQIQKSKIKDIKRKSKVEDEKIVTDPASTDTAKANKLRRNRRKKEPVVGESSISPQAVLDANSAKMKERTGPIWFSLVASDDQDRDAPLPQIPASYLRIKDGNMPVSFIQKYLMKKLDLTSEDEVEIKCMGQPVVPTLQLNNLVDLWLQTTSTSQRIPAAIGSSAKDFVMVLTYARKAPPP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4471g00005 429 MobiDBLite consensus disorder prediction 150 169 - -
Pral4471g00005 429 MobiDBLite consensus disorder prediction 95 201 - -
Pral4471g00005 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 426 IPR044807 GO:0004842
Pral4471g00005 429 SMART ring_2 19 59 IPR001841 -
Pral4471g00005 429 MobiDBLite consensus disorder prediction 112 147 - -
Pral4471g00005 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Pral4471g00005 429 MobiDBLite consensus disorder prediction 277 299 - -
Pral4471g00005 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Pral4471g00005 429 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Pral4471g00005 429 MobiDBLite consensus disorder prediction 170 198 - -
Pral4471g00005 429 CDD RING-HC_PCGF 17 60 - -
Pral4471g00005 429 SUPERFAMILY RING/U-box 14 80 - -
Pral4471g00005 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 114 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4471g00005 Pral-Chr4471 25704 31835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4471g00005 2 348 C3H Transcription Factor Family AT2G30580 53.736 1.68e-111 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4471g00005 K16277 - gmx:100793731 653.669