Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4471g00001 ATGTTGAAAAAGAGGGTCGCACCAGGGCAGCCGAAGAAGAGAACATTCAAGAAGTTCAGTTTCAGAGGAGTTGATCTGGATGCACTCTTGGACATGTCTACTGACGAGCTTGTAAAGCTCTTTCATGCTCGTGCTCGTAGAAGGTTTCAACGCGGTTTGAAACGTAAGCCTATGGCATTGATAAAGAAGCTTCGCAAGGCGAAACGGGAGGCCCCACCCGGTGAAAAGCCAGAGCCAGTAAGGACTCACCTTCGCAACATGATAATTGTACCCGAAATGATTGGCAGCATTATTGGTGTCTACAATGGGAAGACCTTCAATCAAGTTGAAATCAAACCTGAAATGATCGGTCACTATCTTGCTGAATTCTCAATCAGTTACAAGCCTGTTAAGCATGGGAGGCCCGGTATTGGTGCTACTACTCACTCCTCAAGGTTCATTCCTCTTAATGAAGAGTACAAGCTCGTCTCTTTTCTAGTTATGGGTGTACCTTTCATTTGCTGTGCCAAACTATTTATATAG 522 0.4483 MLKKRVAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATTHSSRFIPLNEEYKLVSFLVMGVPFICCAKLFI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4471g00001 173 PRINTS Ribosomal protein S19 family signature 82 101 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pral4471g00001 173 PRINTS Ribosomal protein S19 family signature 102 114 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pral4471g00001 173 PRINTS Ribosomal protein S19 family signature 114 129 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pral4471g00001 173 Hamap 30S ribosomal protein S19 [rpsS]. 45 138 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pral4471g00001 173 FunFam 40S ribosomal protein S15 6 150 - -
Pral4471g00001 173 ProSitePatterns Ribosomal protein S19 signature. 102 126 IPR020934 GO:0003723
Pral4471g00001 173 Pfam Ribosomal protein S19 47 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pral4471g00001 173 Gene3D 30s Ribosomal Protein S19; Chain A 7 150 IPR023575 GO:0003735|GO:0005840|GO:0006412
Pral4471g00001 173 SUPERFAMILY Ribosomal protein S19 53 133 IPR023575 GO:0003735|GO:0005840|GO:0006412
Pral4471g00001 173 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 8 149 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pral4471g00001 173 NCBIfam 30S ribosomal protein S19 16 149 IPR005713 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4471g00001 Pral-Chr4471 2187 4585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4471g00001 7 149 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.112 6.43e-87 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4471g00001 K02958 - nnu:104612419 285.034