LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4469g00034	ATGAGCTCCTCAGAGGCCAAGTCGTTGCCCTTCAAGTCTAAGAAGCCCCATATCTGCCACTCAGCCTCCAAATCCCAATCACCAGATCCCATTTCACTGAGCTCCAAAACACCAGAGAAGGCCTCACAGCTCTCGCACCGTACCAGAAACCGCGGCGTTGCGCTCTCTATTAGAGAAGTCAGGAAAGTCGCTGAAAGCCTCCAGGATCAGAAAGGCCAGCGGCAGAATCATGATCGTACGGGGCAGATCAAGTCCGCCCGAAGGAAGATTGCACCGTCTTTCGCTGAAATCTCCCCCCGCAAATCCAAGGCATCTGTAGATGAGCCCGTCAAGATGCCGGAAAAGTATGAAATTTTGGGTCAGTTCTTTGACAGCTTGGATAGCTCGATACGGTTGTTGCATTTGAAAGGTTCTACAACAACTTTCACGAATATCTGCCCCAAAATTGAATGTTTAACTGATAGGAGATTTACGCATAGTCATCTGGCCCAGTTGAAATATATCTTTCCAGAGGCACTTGCTATAAAGAAGGTGCTCAGGTTTGATGAACGAACAAGTTGTATGAAGCCAGACCTCCATCTTACATTAAATCCCGATTCAAAGTTGTTTTCTGAAGGTGGAAATGTGTCCTTGCGAAAGTTATTTCGCACACGGTTAAGAGATTTTTATGAATCACATCCTGAGGTTGATGAGATTCCAGAAGAAATGCTGCCTGAGCCGTTCAATCACCGTAAGCAAGATCGTCCTTTAGAAACATTGAGAACTACCTCCTCATCATTTGATACGATGCCATCAAATGATGCAGTTGCACCTCGTCGAGCTGCAGAACCTGAGAGCATGCAACATAATGCCATGGTAATCAATTCAGAGCCTGCTAAGGGCGAAGAAAACTTGTCAATGCCTGTTAACATGTCAAATGAAGCACATCATCAACAACCAGCAGTAGCCACTCATATGTCTCATTCTTTTAGAAGGCGCTTTTCTCAGAAATCTGTAAAAGATGAAGCAGATGGTGTTCAACAAAAGTCACCATCAGATTCATTGCCTCCTCAATCTGTCCTAGTTTCAGAATCAAGCATGAAGAAAAATTCATCAAGTGTAGACGCTACTATGTGCCCGGCAATATGTGCTTCTCCAGCTAATCTCAAATCATCTGGTGCTTCAGCTGCCACACCAAATAAAGTTGCTTCTACTCCCTCTAGGTTGATGACTCATACACCTTCGTTGCCTCCCCCTAAGAGATGTTACATGAGCCCCGATGATAGCCCTTGCAGCTCACCAAACAAGTTAGTTAGGCGTCCAACGAGTTTGAAGAAGTCATTGAACTTTGACACGCCAGTGAAAAATCGGAGGACAGAGAATGAAGCTGATGATGCTGGTGGCTTGTCAATTGATGACGATATTTATGATATTCTCCCGGAGGGTCTCCTCCAATCGATTAAAGAAAAGGAGAGAGTGGCAATGGAGGAAAGAAATCCGGCTATCTCACAAGCAAAAAGACGGAAAAAAATGATTGCCTGCCTCCCTAAGCTATTTAACATGATTCATCTCTTGATTCATTCATTGAATCGTTCTGTTGTCACAAAAGAGGAGCTTCTAAGCAAGATAATCTCAAACCATTGTGATATTGTTGACCGGAGAGAAGTTGAAGAGCAGTTGAATTTGTTGCTAGAACTAGTTCCAGAATGGATATCTGAAAAGTTGGCTTCTAGTGGAGATCTGCTATTCTGCATAAATAAACTGCAGGACCCTGAGACCATACGATCACGGCTTGCAGAAGCAAAATGA	1788	0.4413	MSSSEAKSLPFKSKKPHICHSASKSQSPDPISLSSKTPEKASQLSHRTRNRGVALSIREVRKVAESLQDQKGQRQNHDRTGQIKSARRKIAPSFAEISPRKSKASVDEPVKMPEKYEILGQFFDSLDSSIRLLHLKGSTTTFTNICPKIECLTDRRFTHSHLAQLKYIFPEALAIKKVLRFDERTSCMKPDLHLTLNPDSKLFSEGGNVSLRKLFRTRLRDFYESHPEVDEIPEEMLPEPFNHRKQDRPLETLRTTSSSFDTMPSNDAVAPRRAAEPESMQHNAMVINSEPAKGEENLSMPVNMSNEAHHQQPAVATHMSHSFRRRFSQKSVKDEADGVQQKSPSDSLPPQSVLVSESSMKKNSSSVDATMCPAICASPANLKSSGASAATPNKVASTPSRLMTHTPSLPPPKRCYMSPDDSPCSSPNKLVRRPTSLKKSLNFDTPVKNRRTENEADDAGGLSIDDDIYDILPEGLLQSIKEKERVAMEERNPAISQAKRRKKMIACLPKLFNMIHLLIHSLNRSVVTKEELLSKIISNHCDIVDRREVEEQLNLLLELVPEWISEKLASSGDLLFCINKLQDPETIRSRLAEAK	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4469g00034	595	PANTHER	DNA REPLICATION FACTOR CDT1	16	595	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Pral4469g00034	595	MobiDBLite	consensus disorder prediction	341	361	-	-
	Pral4469g00034	595	Gene3D	-	466	595	IPR038090	-
	Pral4469g00034	595	MobiDBLite	consensus disorder prediction	1	86	-	-
	Pral4469g00034	595	FunFam	CDT1-like protein a chloroplastic	465	595	-	-
	Pral4469g00034	595	CDD	Cdt1_c	471	592	IPR032054	-
	Pral4469g00034	595	SMART	CDT1_2	112	239	IPR014939	-
	Pral4469g00034	595	MobiDBLite	consensus disorder prediction	240	268	-	-
	Pral4469g00034	595	Pfam	DNA replication factor Cdt1 C-terminal domain	476	567	IPR032054	-
	Pral4469g00034	595	MobiDBLite	consensus disorder prediction	381	432	-	-
	Pral4469g00034	595	SUPERFAMILY	"Winged helix" DNA-binding domain	105	241	IPR036390	-
	Pral4469g00034	595	MobiDBLite	consensus disorder prediction	42	85	-	-
	Pral4469g00034	595	MobiDBLite	consensus disorder prediction	307	361	-	-
	Pral4469g00034	595	Pfam	DNA replication factor CDT1 like	113	199	IPR014939	-
	Pral4469g00034	595	CDD	Cdt1_m	98	262	IPR014939	-
	Pral4469g00034	595	MobiDBLite	consensus disorder prediction	20	41	-	-
	Pral4469g00034	595	MobiDBLite	consensus disorder prediction	381	404	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4469g00034	Pral-Chr4469	312204	315359	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4469g00034	6	593	Core DNA Replication Machinery Family	AT2G31270	43.934	1.03e-122	372

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4469g00034	K10727		-	qsa:O6P43_006919	627.861