Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4469g00009 ATGCATATTGCTGCAGGTCAAACAGATACAACTTCGGTAAAATGTCTTGTCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAACAATCAAACCCATGCCATTTCAGAAGAACTATAATCATATGATTGGTGTGCTAAAGCGTATGAAACCAGTGCTTGATGATGTTATAGATTGCAAAACTTACTTCGATGAAAATTTATGTAAAGAGTGTGAAGAATTGGATGTGACAGTTAATGAAGCTCGAGAGTTCTTGGAAAATTGGAGCCCAAAGAGAAGCAAGATTCTAAGTGTCCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATATCGTCAGTTGAAATTTGTCACTTGATATATAGATCCCTACAGTCGCCTCCACCTACTTCAGTTTTGTCTAGTCTTGAGAACTATTTGCAGGAACTTAAGTGTTTGAAGAAGGAACCAGCCACAGGCTATATAGAAGAGGCATTGACGAATCAAAGAGAAAATATTGAACCTCACAATGAAAATTTAAAGAATATCATTGAGTTACTTGGCTTGATGGCAAACCTGGAACTCATGAAAGAAAGTATTGCTGTGGAAAAGGAAAGATTGAGTACTGAAGTCAAGAAAATGAAAGCAGAATTAGATGAAATTAATACAATTGTGGGTCTTGTCTGCAGTTTACGTGATTATGTGATTAAATTTGAGCGCCCTGAAGTCAAAAGTGGCATCTCAATTCCTTCGTACTTTATCTGTCCTTTATCATTGGAACTCATGGTGGATCCTGTTATTGTGGCTTCAGGTCAGACATATGATAGGATGTCCATCCAAAAATGGCTTGATAACGGGTTGACTATTTGTCCCAAGACTCATCAGAGACTTGCTCATACAAATCTCATTTCTAATTATACTGTCAAGGCTATGGTAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAGTAACTCTGAGTCCAATAATTTGAAAACCCCCTTAGATCATCTACTGCCCCAAGATTTAGCTCGTTCATGCAGTTTTGGGTCTGTACATAGTAGCAATTCCACGTCGAGATCATTGCTCCAAACTGGAAATGCACTTGAGAAGCAAAAAGGTGATACCTCTTCCAGATTAAGTGGAGAATCCAATGGATGCCAGAGCATAGAAATGGAAAAATTGGAACAACAATCTCCTGCTCCTTCCTATGTTTATAGTAGAAGTGAATCATTGTCAAGCTCTATTTCTAGTACTGACTGTGCACATCCTGTTTCAAAAGAGGCATCAGAGATATTTAACAAGCAACAAAATGTAAAGGAGCTGTCGGGAGAAATCACCAAGGGACCTGCTGATTCTGCAAATGATGAATTAGGGTCTTCTCCTTGGTTATCAGGAAAGCAATTTCAAGGCCCAAGATCAAAATTAGGAGAAACAGAGAATAGAAATAATAACAACGGCCAGTCAAAAGTGCACTCTCTTCCTGTTTGCAGTTCAGGATATGATGAGTCGACAACTACATCTTATATCAATAAATTGATTGAAGATCTTCACAGTCAATCCAATGAAGTGCAAACTAAAGCTGCAGAAGAATTGAGGCTGCTTTCAAAGCACAATGTGGAAAACCGAATCATGATAGGGAAGTGTGGGGCTATCACGCCTTTACTTTCACTACTGTATTCAGAAGTGAAGATAACACAAGAGCATGCTGTGACAGCTTTGCTGAATTTGTCCATTAGTGAAGATAACAAGGCCTTGATTGTGGAAGCTGGAGCGATTGAACCACTTATCCATGTTCTGAAAACAGGAAATGATGGGGCCAAGGAGAATTCTGCAGCAGCTCTGTTTAGCCTTTCTGTAATAGAACATTATAAGGCAACAATTGGCCAGTCTGGAGCAGTCAAAGCTTTGGTTGATCTCCTTGGCTCGGGGACTCTTAGAGGAAAGAAAGATGCTGCTACTGCTTTATTTAACCTATCAATATGTCATGAGAATAAAGCTCGTATTGTTCAAGCTGGAGCTGTTAAGCATCTGGTTCAGTTAATGAACCCTGCTGCTGGAATGATTGACAAGGCTGTTGCTCTTCTGGCAAACTTGTCAACAATTGCAGAAGGGCGATTAGCAATAGCAAGAGAGGGGGCCATCCCCTTGCTAGTTGAGTTTGTTGATTCGGGTTCCCAAAGGGGAAAGGAAAATGCTGCATCCATCCTCTTGCAACTTTGCCTTCATAATACCAAGTTTTGTACTCTGGTTCTGCAAGAAGGAGCGGTACCTCCGTTGGTTGCATTATCTCAGTCTGGGACACCAAGAGCAAAGGAAAAGGCACAACAACTTCTAAGCCATTTTCGCTATCAACGGGAAGGAGCTACTGGGAAGGGAAAAGCTTGA 2373 0.4037 MHIAAGQTDTTSVKCLVNSISRFIHLVSCQTIKPMPFQKNYNHMIGVLKRMKPVLDDVIDCKTYFDENLCKECEELDVTVNEAREFLENWSPKRSKILSVLRSGSLLMKIQISSVEICHLIYRSLQSPPPTSVLSSLENYLQELKCLKKEPATGYIEEALTNQRENIEPHNENLKNIIELLGLMANLELMKESIAVEKERLSTEVKKMKAELDEINTIVGLVCSLRDYVIKFERPEVKSGISIPSYFICPLSLELMVDPVIVASGQTYDRMSIQKWLDNGLTICPKTHQRLAHTNLISNYTVKAMVANWCEENNVKLPSNSESNNLKTPLDHLLPQDLARSCSFGSVHSSNSTSRSLLQTGNALEKQKGDTSSRLSGESNGCQSIEMEKLEQQSPAPSYVYSRSESLSSSISSTDCAHPVSKEASEIFNKQQNVKELSGEITKGPADSANDELGSSPWLSGKQFQGPRSKLGETENRNNNNGQSKVHSLPVCSSGYDESTTTSYINKLIEDLHSQSNEVQTKAAEELRLLSKHNVENRIMIGKCGAITPLLSLLYSEVKITQEHAVTALLNLSISEDNKALIVEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIEHYKATIGQSGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKARIVQAGAVKHLVQLMNPAAGMIDKAVALLANLSTIAEGRLAIAREGAIPLLVEFVDSGSQRGKENAASILLQLCLHNTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRYQREGATGKGKA 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4469g00009 790 Gene3D - 491 784 IPR011989 -
Pral4469g00009 790 MobiDBLite consensus disorder prediction 441 493 - -
Pral4469g00009 790 SMART arm_5 534 574 IPR000225 GO:0005515
Pral4469g00009 790 SMART arm_5 575 615 IPR000225 GO:0005515
Pral4469g00009 790 SMART arm_5 739 779 IPR000225 GO:0005515
Pral4469g00009 790 SMART arm_5 657 696 IPR000225 GO:0005515
Pral4469g00009 790 SMART arm_5 616 656 IPR000225 GO:0005515
Pral4469g00009 790 SMART arm_5 697 737 IPR000225 GO:0005515
Pral4469g00009 790 CDD RING-Ubox_PUB 244 296 IPR045210 -
Pral4469g00009 790 PANTHER U BOX DOMAIN-CONTAINING 36 777 - -
Pral4469g00009 790 FunFam RING-type E3 ubiquitin transferase 489 783 - -
Pral4469g00009 790 Pfam Armadillo/beta-catenin-like repeat 575 614 IPR000225 GO:0005515
Pral4469g00009 790 Pfam Armadillo/beta-catenin-like repeat 534 573 IPR000225 GO:0005515
Pral4469g00009 790 Pfam Armadillo/beta-catenin-like repeat 618 655 IPR000225 GO:0005515
Pral4469g00009 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 709 IPR000225 GO:0005515
Pral4469g00009 790 SUPERFAMILY ARM repeat 500 777 IPR016024 -
Pral4469g00009 790 SUPERFAMILY RING/U-box 241 317 - -
Pral4469g00009 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 669 IPR000225 GO:0005515
Pral4469g00009 790 Pfam U-box domain 243 314 IPR003613 GO:0004842|GO:0016567
Pral4469g00009 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 587 IPR000225 GO:0005515
Pral4469g00009 790 ProSiteProfiles U-box domain profile. 242 316 IPR003613 GO:0004842|GO:0016567
Pral4469g00009 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 325 IPR013083 -
Pral4469g00009 790 MobiDBLite consensus disorder prediction 453 493 - -
Pral4469g00009 790 SMART Ubox_2 246 309 IPR003613 GO:0004842|GO:0016567
Pral4469g00009 790 Coils Coil 184 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4469g00009 Pral-Chr4469 131312 136467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4469g00009 9 790 U-box Gene Family AT3G54790 53.544 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4469g00009 - - gmx:100800949 1074.69