LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4469g00007	ATGGAATCAGAAAATAGAAGAAAATCTGTGAAACCCAAAAATGAAGAAATCCCTTCAGTTCCCCCTGGTTTTAGATCCCTTACTTCTTTCATACTAAAAAGGGTTGCAAACACTGATAAATCTGAATGTGATCCAATTTGCATGGAGAGTATATTGAAGTTAAATGATGCTGCTGCATATAAGGCAATTCTTAAGCATCGTCCATGGATACTTTTTGATCAAAGTGACCATGACCTTAAGAAGTCTGACACAGAGCATTTTCCTCAGGGGTTTTCTTCAAATGCTCATCTTCCAAAAGGGGTTACTGTTGGTTGTCCAGAATGTAGTGATTGTCTGAAGGTAGCTGCAAGGTGGTGCCCTGAGGATGCAAGAAGAGATGTCCTTGATGAAGTTCAAACTTTCCGCCCAACAGAAGAGGAATTTGAAGACACACTTAAATATATTGCAAGCATACGTTCCAAAGCAGAGCCCTATGGAATTTGTCGTATTATTCCTCCTCCTACCTGGGAAGCACCATGTCTTCCCGAGGAAAAAAATATATGGGAAGATGCCAAATTTGTTACTCACATTCAGCGGATTGATGGACTTCAAATTCAGTGCCAACAAGAAGTTATGGACAACTCTTCTGGAAATGCAGAGACCAACACCAGAAGAGGTCTGAGAGTAGCTTTGGACTCTCAACCTGGTAATGAAAACCCCCATGATGTTGAAGACTCTAAGTCCAAACCTGGCCCTGCATTCAATCTCAGTACATTTAAGAAATTTGCTGATGGTTTCAAGGCCAACTACTTCAACTGTGACAATAATGATGTGGGTTCTGACGAAAAGTGGGAGCCAACGGTGGAAAATATTGAGGGTGAGTATGGACGGATTATTCAAAATCCAACTCATGAAATTGAGGTGCTTGTTGGTAACAACTTGGGGGCTGGAGTTTTAAGCAGTGGATTTCCAATAATGCCTGATCCTCTGGAGTCATGCAAATATCCGAAATGTATGAGATCTGGATGGAACTTAAATAATATGCTTACACAATCTGGTTCTCTTCTTTCATTTGAGAGCTCTGAGGTTTCTAGTAAATTTGCCCCTCGGGTTCATGTGGGAATGTGTTTTTCTTCATTCAATTGGAAAGTAGAAGAGCACCAGTTGTACACATTGTGTTACATGCATGTGGGAGAGCCTAGAGCTTGGTATAGCATTCCGGGAAGATTTGCTGCTGACTTTGAAACAGTGACGAAGAAGCATCTCCCAGTTTTATTTGCAGAACAGCCTGACTTGCGTGACAAGTTGTTATCCTCCACCTTATTGAAGTCAGAGGGTATACCAGTATATCGCTGTGTTCAGTATCCCAGGGAGTTCGTTCTTGTTTTCCCAGGAGCATACCATTCTGGATTTGATTGTGGTTTCAATTGCTCTGAATCAGTCAGTTTTGCTCCTCTTGATTGGCTGATCCACGGACAGAATGTTGTAGAGTTATATTGTGAACAAAGGAGAAAGACTTCAATCTCATATGATAAGTTGCTTCTTGGGGCGGCAAGGAAAGCTGTTAGGGCACAATTTGAGATTGAACTCTGCGGGATGGGTAACCCAGATAATTTACACTGGAAAGATGCATGTGGAAGGGATGGGATATTAACAAAAGCTTTTGATTTACGGAGAAAGAGTGAAAGTTCGAAGAGGGAATTTCTTTGCGCTTCCCTGAAATCACAGAGAATGGAAAAGGACTTTGATGTCACATGCAAAAGAGAATGTTGCATATGTCTGCGTGATTTACACTTATCTGCCATAAGTTGTCCATGCTCAAACGACAAATTTGCATGTCTTAATCATGCAAAGCAGCTGTGTTGCTGCCCTTGGAGTGACAGATCCATTCTCTGCCGATACGAAATCAGCGAGTTGGATACCCTTTGTCTTGCTTTGGAGGGAAAAGCAAGTGTTGTCCACAAATGGGCCAAAGTCGATCTTGGATTAACTGTGCACTCCCTTGCCTCCAAGAGAAATATGAGTGGTTCTCCGTCTAACCCTTTGGCCAGAGAAGCATTTTTGAATTCTCTGAAACGGAAAAGAGATGCAGTCGAGTCCGAAGGTACGAGCACGGATGGTATCTCTTCCAGCATCGAGGCAAAATTGAAGGCACCTTTACCTGAATCAACATGTATTGGTAAGTCCATGGGAAAACAGAAAACGACAGGCCAACAATCTACAGCAAGACACATTAAGAGTGGGGCCAATTCTGCTGGGGCCAATAAACCCGATCCGAAGTCAGGGAAGGTTCAGTCATCAATTCCAAGTTTAGCTAAAAATGACCCAAAAGTGGGTAGGGATTTTCTAGGTCTTAGTCTAACGTCAGGTCATATGGCACTGCTGCCTGAAGTCAGGCCATTTGATGTTTCTTCAGATAGTTCATCTTCATTATCAGAATCCGATGATGACGCTTAA	2436	0.4232	MESENRRKSVKPKNEEIPSVPPGFRSLTSFILKRVANTDKSECDPICMESILKLNDAAAYKAILKHRPWILFDQSDHDLKKSDTEHFPQGFSSNAHLPKGVTVGCPECSDCLKVAARWCPEDARRDVLDEVQTFRPTEEEFEDTLKYIASIRSKAEPYGICRIIPPPTWEAPCLPEEKNIWEDAKFVTHIQRIDGLQIQCQQEVMDNSSGNAETNTRRGLRVALDSQPGNENPHDVEDSKSKPGPAFNLSTFKKFADGFKANYFNCDNNDVGSDEKWEPTVENIEGEYGRIIQNPTHEIEVLVGNNLGAGVLSSGFPIMPDPLESCKYPKCMRSGWNLNNMLTQSGSLLSFESSEVSSKFAPRVHVGMCFSSFNWKVEEHQLYTLCYMHVGEPRAWYSIPGRFAADFETVTKKHLPVLFAEQPDLRDKLLSSTLLKSEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSESVSFAPLDWLIHGQNVVELYCEQRRKTSISYDKLLLGAARKAVRAQFEIELCGMGNPDNLHWKDACGRDGILTKAFDLRRKSESSKREFLCASLKSQRMEKDFDVTCKRECCICLRDLHLSAISCPCSNDKFACLNHAKQLCCCPWSDRSILCRYEISELDTLCLALEGKASVVHKWAKVDLGLTVHSLASKRNMSGSPSNPLAREAFLNSLKRKRDAVESEGTSTDGISSSIEAKLKAPLPESTCIGKSMGKQKTTGQQSTARHIKSGANSAGANKPDPKSGKVQSSIPSLAKNDPKVGRDFLGLSLTSGHMALLPEVRPFDVSSDSSSSLSESDDDA	811

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4469g00007	811	Pfam	jmjN domain	133	165	IPR003349	-
	Pral4469g00007	811	Gene3D	Cupin	116	477	-	-
	Pral4469g00007	811	ProSiteProfiles	JmjC domain profile.	330	493	IPR003347	-
	Pral4469g00007	811	MobiDBLite	consensus disorder prediction	716	773	-	-
	Pral4469g00007	811	SUPERFAMILY	Clavaminate synthase-like	327	515	-	-
	Pral4469g00007	811	MobiDBLite	consensus disorder prediction	1	21	-	-
	Pral4469g00007	811	MobiDBLite	consensus disorder prediction	721	741	-	-
	Pral4469g00007	811	MobiDBLite	consensus disorder prediction	224	245	-	-
	Pral4469g00007	811	Pfam	JmjC domain, hydroxylase	364	476	IPR003347	-
	Pral4469g00007	811	PANTHER	LYSINE-SPECIFIC DEMETHYLASE	126	724	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4469g00007	Pral-Chr4469	96766	104547	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4469g00007	1	667	JUMONJI Transcription Factor Family	AT1G08620	45.946	0.0	579

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Pral4469g00007		JmjC	5.3e-30	CL0029

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4469g00007	K11446		-	pcin:129315581	1332.01

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