Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4467g00030 ATGGAGGACTCTGGGAAGCATGGTAACAACAGTAAATTCTTGAACCCATGGATGCTTCAGTTCCAAAAAATGAGTCTTGAACTCAAGTGCCCTCTCTGTTTAAACTTGTTCAAAAGGCCGATGTTACTTCCATGCAACCACATATTCTGCAGCTCATGTATAGCCGATTGCTCGAGGCCTAGTTCAGAATGCGCTTTCTGTAATACTCATTATACTCAAAGAGATCTGAGGTCTCTGCCTATCGTGGAAAACATGGTTGCAATTTATAAAAGCCTGGATGCTGCCTTTTATGCCAATCTATCTCAGCATCGTTCTTCTGATGAGCTGCCAGTTTTGTCCAAGGAGCCATCCAAAATATCTCTGGAAGATAATTTACACAGGGAGCAGTCAGTCTTTTCACAAACCGTGACTGAACGTGTTGAGGATCCTTTCAGTTTAGACCATTCTCGGGAAGTTGATATGGGCAATAATCACAAATACGAGAAGAGTGGTAATGTGATGCATGGTAAAGATAATAAGTTTGGGGGTTCTTGGAAGGAAGAAATTTTGATGAAATGTTCCCAACTGGATGGAGGGGCCCATGAAGATTGTGGACCTGTGGAAATGGACATAAATCAAGTTACTCAATCTTCACCAGGCAGCCCTCCATTTTGTGATACAAAAGGTTCAGACAATGACTGCAGTGACCGGGACAGTGAACATCGCATGCCTGCTGAAAGATTAGAAAGTTCTTCATCAAAGAGAGCAAGCAAAGAAAATGAAATATTGGAAAAGAGGATCCAGTTGAGGTCTGAAAGCTCTGCCTCTGAAACAGAGGGTCTTGTGAGAGACTCCAAGAGGCCAAAAAATCTTATACATGACAACAATGGCATGCAAGCTAATGTTACCCATCAAAGTAAGCCCATGACTTCTGAATGTAACGTGGACCTTAAATCTGGGATTGACCTGGATTCATGTTCAAATACAAGCGTGTGTTCTTTTTGCCAGTCTTCTAGAGCCTCGGAGGTTACTGGGCCGATGTTGCATTATAAAAATGGAAATTTGGTGACAGGAGCTGCAGCGTTCCAACCGAATGTGATACATGTGCATAAACTTTGCATTGAATGGTCACCTCAAGCGTATTTTGTTGATGAAACTGTTAAAAATTTGAGGGCAGAAGTGGCAAGGGGAGCAAAGCTTAAATGCAGCAAATGTGGCCAAAAGGGGGCTGCTCTTGGATGCTATGTCAGATCCTGTAGGAGAACTTATCATTTTCCTTGTGCAATGGAAATCTCAGCTTGCCGTTGGGATGATGAGGAATATCTTATGCTCTGTCCAGCTCATTCTCATGTCAAATTTCCAAGTGAGAAATCCATTTCTAAGAAACAGAGCTCCCGGAAGCATCCTGCACCATCTCATTTGACATCTAAGCTGTCAAATTCTCCACTGGTTCTGTCAGATGATAGTAAACATTTGGTTTTCTGTGGATCTGCTCTGTCTACAGATGAAAAGATACATTTGATCAATTTTGCAAGTAGGATTGGTGCTACCGTTACCAAGTTTTGGACGCCAGATGTGACACACGTGATTGCAGCAACTGATTCAAACGGAGCATGTGCCAGGACACTTAAAGTTCTTATGGCCATTTTAAATGGGCAATGGATTCTTAAAATGGACTGGGTAACTGCAAGCATGGAGGTGATGCGTCCTGTGGAAGAAGAGCTATATGAAATAAGTCTTGATAACCATGGCTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGCGCCCAAGCTGTTTAACGGCTTTAGTATGTACTTCTCTGGTGATTACACGTCAGATTATAGGGAAGATCTTGTAGACTTGGTTGTAGCGGGAGGAGGCACTATTTTAGAAAGCAAGGAAGAATTGCATAAAGGTCATGACTGCAAGGAGACCTCAAAGCTGATTGTTTACAATCTTGATCCTCCACAAGGGAGCAGGTTGGGGGATGAAGTTACAATTCTTTGGGAGAGATTAAACGAGGCAGAGGATTTAGCCGCTACCACTGGTTCACAAGTCGTTGGTCACACATGGATCTTGGAATCAATTGCTGCATGCAATTTACAGCCTTTTCTTGGTTAG 2115 0.4298 MEDSGKHGNNSKFLNPWMLQFQKMSLELKCPLCLNLFKRPMLLPCNHIFCSSCIADCSRPSSECAFCNTHYTQRDLRSLPIVENMVAIYKSLDAAFYANLSQHRSSDELPVLSKEPSKISLEDNLHREQSVFSQTVTERVEDPFSLDHSREVDMGNNHKYEKSGNVMHGKDNKFGGSWKEEILMKCSQLDGGAHEDCGPVEMDINQVTQSSPGSPPFCDTKGSDNDCSDRDSEHRMPAERLESSSSKRASKENEILEKRIQLRSESSASETEGLVRDSKRPKNLIHDNNGMQANVTHQSKPMTSECNVDLKSGIDLDSCSNTSVCSFCQSSRASEVTGPMLHYKNGNLVTGAAAFQPNVIHVHKLCIEWSPQAYFVDETVKNLRAEVARGAKLKCSKCGQKGAALGCYVRSCRRTYHFPCAMEISACRWDDEEYLMLCPAHSHVKFPSEKSISKKQSSRKHPAPSHLTSKLSNSPLVLSDDSKHLVFCGSALSTDEKIHLINFASRIGATVTKFWTPDVTHVIAATDSNGACARTLKVLMAILNGQWILKMDWVTASMEVMRPVEEELYEISLDNHGCQGGPKAGRLRALANAPKLFNGFSMYFSGDYTSDYREDLVDLVVAGGGTILESKEELHKGHDCKETSKLIVYNLDPPQGSRLGDEVTILWERLNEAEDLAATTGSQVVGHTWILESIAACNLQPFLG 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4467g00030 704 MobiDBLite consensus disorder prediction 223 284 - -
Pral4467g00030 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 444 IPR013083 -
Pral4467g00030 704 Pfam BRCA1 C Terminus (BRCT) domain 486 557 IPR001357 -
Pral4467g00030 704 MobiDBLite consensus disorder prediction 205 290 - -
Pral4467g00030 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 100 IPR013083 -
Pral4467g00030 704 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Pral4467g00030 704 CDD ePHD 325 441 - -
Pral4467g00030 704 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pral4467g00030 704 ProSiteProfiles Extended PHD (ePHD) domain profile. 322 442 IPR034732 -
Pral4467g00030 704 SMART ring_2 395 441 IPR001841 -
Pral4467g00030 704 SMART ring_2 30 67 IPR001841 -
Pral4467g00030 704 SMART BRCT_7 594 697 IPR001357 -
Pral4467g00030 704 SMART BRCT_7 475 561 IPR001357 -
Pral4467g00030 704 SUPERFAMILY BRCT domain 485 572 IPR036420 -
Pral4467g00030 704 MobiDBLite consensus disorder prediction 148 168 - -
Pral4467g00030 704 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 237 702 IPR031099 GO:0006281|GO:0006974
Pral4467g00030 704 ProSiteProfiles BRCT domain profile. 466 571 IPR001357 -
Pral4467g00030 704 Gene3D BRCT domain 593 697 IPR036420 -
Pral4467g00030 704 Pfam RING-type zinc-finger 30 59 IPR027370 -
Pral4467g00030 704 SUPERFAMILY RING/U-box 22 88 - -
Pral4467g00030 704 Gene3D BRCT domain 482 587 IPR036420 -
Pral4467g00030 704 SMART PHD_3 394 442 IPR001965 -
Pral4467g00030 704 MobiDBLite consensus disorder prediction 449 470 - -
Pral4467g00030 704 CDD BRCT_Bard1_rpt1 485 564 - -
Pral4467g00030 704 Pfam PHD-like zinc-binding domain 363 442 - -
Pral4467g00030 704 FunFam Breast cancer type 1 susceptibility protein homolog 482 588 - -
Pral4467g00030 704 ProSiteProfiles BRCT domain profile. 592 694 IPR001357 -
Pral4467g00030 704 SUPERFAMILY BRCT domain 596 701 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4467g00030 Pral-Chr4467 135296 141429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4467g00030 515 628 Core DNA Replication Machinery Family AT4G02110 33.613 1.22e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4467g00030 K10683 - gmx:100784883 837.795