Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4467g00009 ATGGCTATCTCGCAATTGCTCGATAAAATCTTTTCTTCATTGCCATCAAGATCGCCGAACTCCCTTTTGACAACGATCGTAGGATTGCCCGTTTTGGAACTAGCCGCAATCTGCGTCAACTTAACTATTCTTCTCGTGTTTCTCCTTGTAATCTCAGCGAGGCAGATATACGTGTGTGTTGGTCGAATTCGAATATGCAAGGAAAACACGACTGGCGATCCAAATCCAATTCGTCATAGTTATATCGACAGAAACACACACGACGTTAGAATCGGTTCGAGTTTCAAATTGGCATTGCTCTGTTGTTTCTATGTGCTCTTTGTTCAAGTCCTGGTGTTAGGATTTGATGCAGCTGCTTTGATCAGAGAATCGACTCATGGGAATACAGTGAACTGGTGGCTTCTTTCTTTGCCATCCGCGCAGGGTTTAGCTTGGTTTGTAATCAGCTTCTCCGCTTTGCATTGCAAACTCGACTTGTCCGAGAAGTTTCCGTTTTTGTTGAGGATTTGGTGGTTTGTCTCATTTGTAATTTGCTTGTGCACTTTGTATCATGATGGGAGAGTACTTATGGTGGAAGGTTCAAAACATCTTTCTTCTCATGTTGTGGCAAATTTTGCTGCCACTCCAGCTCTTGCTTTTCTATGCATTGTTGCAATTCGAGGTGTTACTGGCATAAAGGTTCGTAGAAACTCTGATCTTCGAGAGCCATTACTTACTGAAGAAGAAGAAGAAGAAGCAGGTTGTCTCAAGGTCACTCCATATAGTGATGCTGGAATTTTTAGCTTGGCCACTCTCTCTTGGCTCAACCCGCTTCTCTCAATTGGGGCTAAGAGACCGCTTGAGCTCAAGGACATTCCCCTCCTTGCGCCAAAAGATCGAGCTAAGACCAATTATAAGATTCTGAACTCTAAATGGGAGAGATTGAGGGCTGAAAATCCTTCAAAGCAGCCTTCTTTAGCTTGGGCAATTCTCAAGTCTTACTGGAAGGAGGCAGCTTGTAATGCTATCTTTGCTGGTATGAATACTCTTGTCTCGTATGTAGGTCCATACATGATAAGCTACTTCGTTGATTACTTAGGTGGTAAAGAGACATTCCCATATGAAGGGTACATCCTTGCGGGGACATTTTTTGCTGCAAAGCTAATGGAAACCTTAACGACAAGACAGTGGTATTTGGGGGTGGACATCTTGGGTATGCACGTCCGGTCAGCTCTAACAGCAATGGTATATCGGAAGGGACTCAGGCTCTCAAGCTCGGCCAAGCAGAGTCACACAAGTGGGGAGATTGTTAACTACATGGCTGTGGATGTTCAGAGGGTGGGGGATTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTTCAGATCATTCTCGCCCTTGCAATTTTGTACAAGAATGTTGGACTTGCTTCAATTGCTACATTGATTGCCACAATCATTTCCATTGTTGTTACTATTCCAGTGGCTAGGATACAAGAAAATTTTCAAGACAAATTAATGGCCGCTAAGGATGAAAGAATGAGGAAAACATCTGAGTGCTTGAGGAACATGAGGATCCTCAAGTTGCAAGCTTGGGAGGATCGATATCGAATACAGTTGGAAGAAATGCGCGGAGTAGAGTTCAAGTGGCTACGTAAAGCCCTCTATTCTCAGGCTTTCATCACTTTCATCTTTTGGAGCTCTCCTATATTTGTTTCTGCTATCACTTTTGGCACTTCAATATTGTTGGGGGATCAGTTGACTGCAGGTGGAGTTCTCTCTGCTCTTGCTACTTTCAGGATCCTTCAAGAGCCTTTGAGGAATTTTCCTGACTTGGTATCGACAATGGCGCAGACGAAAGTTTCTCTTGATCGCATATCTAGTTTCTTGCAGGAGGAAGAATTGCAAGAGGATGCAACCACCGTCTTGCCACGAGGAACTTCTGACATTGCCATTGAGATTGAGGACGGAGTCTTCTACTGGGACCCTTCTTCTAGGCCTACTCTTTCAGGTATACAAATGAAAGTGAAAAGGGGCATGCGTGTGGCTGTTTGCGGCATGGTCGGTTCTGGGAAATCAAGCTTCCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTAAGAGTGTGTGGTTCAGCGGCATATGTCTCCCAGTCAGCATGGATACAGTCAGGAAATATTGAAGAAAATATCCTTTTTGGAAGCCCTATGGATAAAGCAAAGTACAAGAGAGTTCTTCATGCTTGTTCACTGAAGAGGGACTTGGAACTCTTCTCTCATGGAGACCAAACAATTATAGGCGATAGAGGTATAAACTTGAGTGGAGGCCAGAAACAGCGGGTGCAGCTTGCACGAGCTCTTTATCAAGATGCTGATATTTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCTCACACTGGATCAGAACTGTTTAACGAATACATACTGACAGCGCTAGCAGATAAAACAGTTATTTTTGTGACCCATCAAGTGGAATTTCTCCCTTCAGCTGATTTGATACTGGTTCTTAAAGAAGGCCAAATCATACAGGCAGGAAAATACGATGATCTTTTACAAGCAGGAACAGATTTCAAAACTCTAGTTTCGGCTCATCATGAAGCCATTGAGGCTATGGATATTCCTAACCACTCAGAAGATTCAGATGAAAATGTGTCCTTGGAGGCATCTGTTATGGCCAGTAAAACGTCCATTATATCTGCAAATGATATTGAAAGCCTAGCCAAGGAAATGCAAGAGGGTTCATCAGTTTCAGAACAGAAAGCAATCAAGGAGAAGAAGAAAGCAAAGCGGTCAAGGAAAAAACAACTTGTTCAGGAAGAGGAGAGGGTCAGAGGTAGAGTCAGCATGAGGGTGTACTTGTCATACATGGCTGCAGCATATAAAGGCTTACTGATTCCACCCATAATCATTGCGCAAGCATTGTTTCAGTTTCTTCAAATTGCTAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTGAAGGAGACCAACCCAAAGTAACTCCTATGGTTCTTCTTCTGGTGTACATGGCTCTTGCTTTTGGAAGCTCTTGGTTTATATTTATAAGGGCTGTTCTGGTAGCTACATTTGGGCTAGCAGCTGCACAGAAACTTTTTATAAAAATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCCACGCCAGCTGGAAGGATATTGAACCGTGTATCGATTGATCAGAGTGTTGTGGATCTTGACATTCCTTTTAGACTAGGAGGATTTGCTTCGACAACAATACAACTTATTGGGATTGTTGGTGTAATGACAAAGGTTACCTGGCAAATTTTGCTTCTGGTTGTCCCGATGGCTGTGGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCGTCAAGAGAGCTGGTCCGTATAGTAAGCATCCAGAAATCTCCAGTTATACATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATCAGGGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGAAACCTCTATCTTCTGGACTCTTTTGCTCGGCCATTCTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGTATGGAATTATTGTCAACCTTTGTGTTTGCTTTCTGCATGATTTTACTAGTGAGCTTTCCACATGGGAGTATTGACCCTAGCATGGCTGGTCTTGCTGTGACGTATGGCTTGAATTTAAATGCCCGCCTATCACGGTGGATTCTTAGCTTTTGCAAACTTGAGAATAAAATAATTTCTATTGAAAGGATTTATCAGTACAGCCAAATTCCGAGTGAAGCACCAACTGTTATTGAAGACACTCGCCCTCCATCCACATGGCCTGAGAATGGCACAATCAGTATAATTGATTTGAAGGTTCGTTACAAGGAGAATCTTCCATTGGTGCTTCATGGAACATCATGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGTACTGGCAGTGGCAAATCTACTTTGATACAAGCATTGTTTCGATTGGTTGAACCATCAAGCGGCAGTATCCATATAGACGACATTGATATTACAAGCATTGGTCTTCATGACCTTCGAAGCCGTCTCAGTATCATACCTCAAGATCCAACCTTATTTGAAGGGACTATACGAGGCAATCTCGATCCTCTTGAAGAGCACTCTGATAAAGAGATTTGGGAGGCGCTAGATAAGTCTCAGCTCAGAGATATTATTCGGCAGAAAGAAGAAAAGCTTGATACGCAAGTGCTTGAAAATGGTGATAATTGGAGCGTAGGGCAGCGACAACTTGTGGCGCTGGGGCGGGCTTTATTGAAGCAATCAAGGATACTTGTACTTGATGAAGCAACAGCATCAGTTGATACAGCAACTGATAATCTTATACAGAAGATTATTCGGACAGAGTTTAAAGATTGCACTGTCTGCACTATTGCACATCGTATCCCTACTGTTATTGACAGTGATCTTGTTCTAGTCCTCAGTGATGGTCGAGTGGCAGAGTTTGACACGCCATCCCGACTATTAGAGGATAAGTCCTCGATGTTCCTGAAGTTGGTGACAGAGTATTCATCAAGGTCAAGTGGCATACCAGATTTTTGA 4608 0.4319 MAISQLLDKIFSSLPSRSPNSLLTTIVGLPVLELAAICVNLTILLVFLLVISARQIYVCVGRIRICKENTTGDPNPIRHSYIDRNTHDVRIGSSFKLALLCCFYVLFVQVLVLGFDAAALIRESTHGNTVNWWLLSLPSAQGLAWFVISFSALHCKLDLSEKFPFLLRIWWFVSFVICLCTLYHDGRVLMVEGSKHLSSHVVANFAATPALAFLCIVAIRGVTGIKVRRNSDLREPLLTEEEEEEAGCLKVTPYSDAGIFSLATLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKILNSKWERLRAENPSKQPSLAWAILKSYWKEAACNAIFAGMNTLVSYVGPYMISYFVDYLGGKETFPYEGYILAGTFFAAKLMETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIILALAILYKNVGLASIATLIATIISIVVTIPVARIQENFQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAITFGTSILLGDQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISSFLQEEELQEDATTVLPRGTSDIAIEIEDGVFYWDPSSRPTLSGIQMKVKRGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGSPMDKAKYKRVLHACSLKRDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFNEYILTALADKTVIFVTHQVEFLPSADLILVLKEGQIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSEDSDENVSLEASVMASKTSIISANDIESLAKEMQEGSSVSEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMRVYLSYMAAAYKGLLIPPIIIAQALFQFLQIASNWWMAWANPQTEGDQPKVTPMVLLLVYMALAFGSSWFIFIRAVLVATFGLAAAQKLFIKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTKVTWQILLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPVIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDSFARPFFCSLAAIEWLCLRMELLSTFVFAFCMILLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTVIEDTRPPSTWPENGTISIIDLKVRYKENLPLVLHGTSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPSSGSIHIDDIDITSIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLRDIIRQKEEKLDTQVLENGDNWSVGQRQLVALGRALLKQSRILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4467g00009 1535 FunFam ABC transporter C family member 3 1272 1524 - -
Pral4467g00009 1535 Pfam ABC transporter transmembrane region 336 600 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4467g00009 1535 Pfam ABC transporter transmembrane region 974 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4467g00009 1535 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1289 1523 IPR003439 GO:0005524
Pral4467g00009 1535 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1526 - -
Pral4467g00009 1535 CDD ABCC_MRP_domain1 646 845 - -
Pral4467g00009 1535 Pfam ABC transporter 663 797 IPR003439 GO:0005524
Pral4467g00009 1535 CDD ABCC_MRP_domain2 1287 1507 - -
Pral4467g00009 1535 ProSitePatterns ABC transporters family signature. 770 784 IPR017871 GO:0005524|GO:0016887
Pral4467g00009 1535 FunFam ABC transporter C family member 5 631 877 - -
Pral4467g00009 1535 SUPERFAMILY ABC transporter transmembrane region 321 628 IPR036640 GO:0005524|GO:0016020
Pral4467g00009 1535 FunFam ABC transporter C family member 5 933 1270 - -
Pral4467g00009 1535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 867 IPR027417 -
Pral4467g00009 1535 CDD ABC_6TM_ABCC_D2 973 1264 IPR044726 GO:0140359
Pral4467g00009 1535 CDD ABC_6TM_ABCC_D1 333 620 IPR044746 GO:0140359
Pral4467g00009 1535 Coils Coil 291 311 - -
Pral4467g00009 1535 Coils Coil 927 947 - -
Pral4467g00009 1535 Gene3D - 641 873 IPR027417 -
Pral4467g00009 1535 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 335 612 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4467g00009 1535 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 646 868 IPR003439 GO:0005524
Pral4467g00009 1535 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 973 1242 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4467g00009 1535 SMART AAA_5 672 853 IPR003593 GO:0016887
Pral4467g00009 1535 SMART AAA_5 1315 1500 IPR003593 GO:0016887
Pral4467g00009 1535 Gene3D ABC transporter type 1, transmembrane domain 931 1270 IPR036640 GO:0005524|GO:0016020
Pral4467g00009 1535 Gene3D ABC transporter type 1, transmembrane domain 303 629 IPR036640 GO:0005524|GO:0016020
Pral4467g00009 1535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1279 1519 IPR027417 -
Pral4467g00009 1535 Gene3D - 1272 1525 IPR027417 -
Pral4467g00009 1535 SUPERFAMILY ABC transporter transmembrane region 972 1269 IPR036640 GO:0005524|GO:0016020
Pral4467g00009 1535 Pfam ABC transporter 1307 1454 IPR003439 GO:0005524
Pral4467g00009 1535 FunFam ABC transporter C family member 10 315 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4467g00009 Pral-Chr4467 34746 41975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4467g00009 659 861 Calmodulin-binding Proteins AT2G36910 31.081 1.57e-19 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4467g00009 - - qsa:O6P43_010444 2573.5