Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4463g00050 ATGAATTACTGTGTTCCAGATTTCGAAATTGAAATGGATGATGATGAATATCCGATGCCCACGTCTTCTTCTGGGGTGCCCCGCCAAAAGAAGCCCTCCGTGGCCCAGGACGACATCATGGAGCTCCTGTGGCAAAACGGCCAGGTCGTGATGCAGAGCCAGAATCAACGGTCTCAGAGAAAACCGCAGCCAGAGAGGTACCCTGATAGCGTAATTCCAGCCGGTCCATCGACGGCGAGTGAGATTCGACCCTCACAGCAAGTAGAACAACACTATCAGAATCAACATGTCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCATTATCCCATCGTAGATGATCCTCCCTTGGATCATAACTTCTGCGCCGACATCCTCTACCCGCAGCAGCCTGCTGTCAATAACATTTCCATGCAAAATCCTGACCGTAAGTCTCAAGCAACGGAACTTCGGCAGCCATCGAGGTCGGTCGCTCCACGGCCGCCGATTCCACCTCCACGGAAGCCGGAGCAGGTGCAGACGATGATACCGAACTTCGCGCACTTCTCGAAACACAATGCGAGAGTCGAAACGGGACCGTCGAGTTCGAAGACGGCAATGAAGGAATTGACGGTGGTAGATTCATGCGACACTCCGGCCTTGATGGCGTCGGCTTCCAGAGTCTCGGAGGCTTTCAGAAACTCGGCGGAGCCAACAAAGCGTGATGAGGATCCCGGAACCCTGAGCACTGCCGGGGCCGCGGCGCCTTCGTCAACGTCGGTCGGCGGAGATACTGGCTGCAGGGGGACAACAACGTGCGAGATGATGGCGACGTCATCTCCGGGGGGTTCGAGCGGGGGTGCTGAACATGCAGGGAAACCTCCGACTGAAGATCGGAAACGGAAGGGCCGGGAACCCGATGAATCGGAGTGCCACAGCGAGGATGTCTACGGTGAATCTGCTGAAGCCAAGAAACAAAACTGCGGATCATCATCTACTAAAAGATCCCGTGCTGCAGAGGTTCATAATCTCTCGGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATCCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGGATGGTACCAATGATGTTTCCCGGAATCCAACAGTATATGCCACCAATGGGGATGGGGATGGGGATGGGGATGGGCATGGGCATGGGCATGGGCATGGGCATGGAAATGGGAATGAATAGGCCACTAATGCCATTTCCCAATGTGTTAGCTGCTTCAGCTATGCCACCGGCGGCGGCAGCTCAATTGGGACCAAGGTTCCCTATGCCTCATTTCCAAATGCCTCATGCCCCTCAGCCTGATTCATCTAGAATGCAAGCAGCCGCTCCAAATCAACCGGAAAATAATATGCCTCCTTCTCTTGTCCCACCTGTTCCCAGTCAGTCACGGATCCCAAACTTTAGTGATCCTTATCAGCAATGCCTTGGTCCCCACCAGATGCATCTACAGTTCATGCAGAACCAGGCAATGAACAACCCAACTGTCAGCAAACCAAGTACCATTAAGAGCCATGAAAATGCAGAAAATAATCAACCCGGTCAACCAGAGTAA 1665 0.5219 MNYCVPDFEIEMDDDEYPMPTSSSGVPRQKKPSVAQDDIMELLWQNGQVVMQSQNQRSQRKPQPERYPDSVIPAGPSTASEIRPSQQVEQHYQNQHVFMQEDEMISWLHYPIVDDPPLDHNFCADILYPQQPAVNNISMQNPDRKSQATELRQPSRSVAPRPPIPPPRKPEQVQTMIPNFAHFSKHNARVETGPSSSKTAMKELTVVDSCDTPALMASASRVSEAFRNSAEPTKRDEDPGTLSTAGAAAPSSTSVGGDTGCRGTTTCEMMATSSPGGSSGGAEHAGKPPTEDRKRKGREPDESECHSEDVYGESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGMGMGMGMGMGMGMGMEMGMNRPLMPFPNVLAASAMPPAAAAQLGPRFPMPHFQMPHAPQPDSSRMQAAAPNQPENNMPPSLVPPVPSQSRIPNFSDPYQQCLGPHQMHLQFMQNQAMNNPTVSKPSTIKSHENAENNQPGQPE 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4463g00050 554 PANTHER TRANSCRIPTION FACTOR PIF3 26 493 IPR044273 GO:0003700|GO:0006355
Pral4463g00050 554 MobiDBLite consensus disorder prediction 158 172 - -
Pral4463g00050 554 MobiDBLite consensus disorder prediction 51 86 - -
Pral4463g00050 554 MobiDBLite consensus disorder prediction 525 554 - -
Pral4463g00050 554 Pfam Helix-loop-helix DNA-binding domain 335 381 IPR011598 GO:0046983
Pral4463g00050 554 MobiDBLite consensus disorder prediction 286 315 - -
Pral4463g00050 554 FunFam Basic helix-loop-helix transcription factor 326 389 - -
Pral4463g00050 554 MobiDBLite consensus disorder prediction 136 154 - -
Pral4463g00050 554 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 409 IPR036638 GO:0046983
Pral4463g00050 554 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Pral4463g00050 554 MobiDBLite consensus disorder prediction 245 279 - -
Pral4463g00050 554 SMART finulus 337 386 IPR011598 GO:0046983
Pral4463g00050 554 MobiDBLite consensus disorder prediction 221 346 - -
Pral4463g00050 554 MobiDBLite consensus disorder prediction 136 172 - -
Pral4463g00050 554 Gene3D - 326 389 IPR036638 GO:0046983
Pral4463g00050 554 MobiDBLite consensus disorder prediction 461 501 - -
Pral4463g00050 554 MobiDBLite consensus disorder prediction 318 332 - -
Pral4463g00050 554 CDD bHLH_AtPIF_like 331 394 IPR047265 -
Pral4463g00050 554 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4463g00050 Pral-Chr4463 236227 241282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4463g00050 1 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.604 4.40e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4463g00050 HLH 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4463g00050 - - pcin:129287665 855.129