Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4463g00049 ATGGATGATGATGAATATCCGATGCCCACGTCTTCTTCTGGGGTGCCCCGCCAAAAGAAGCCCTCCGTGGCCCAGGACGACATCATGGAGCTCCTGTGGCAAAACGGCCAGGTCGTGATGCAGAGCCAGAATCAACGGTCTCAGAGAAAACCGCAGCCAGAGAGGTACCCTGATAGCGTAATTCCAGCCGGTCCATCGACGGCGAGTGAGATTCGACCCTCACAGCAAGTAGAACAACACTATCAGAATCAACATGTCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCATTATCCCATCGTAGATGATCCTCCCTTGGATCATAACTTCTGCGCCGACATCCTCTACCCGCAGCAGCCTGCTGTCAATAACATTTCCATGCAAAATCCTGACCGTAAGTCTCAAGCAACGGAACTTCGGCAGCCATCGAGGTCGGTCGCTCCACGGCCGCCGATTCCACCTCCACGGAAGCCGGAGCAGGTGCAGACGATGATACCGAACTTCGCGCACTTCTCGAAACACAATGCGAGAGTCGAAACGGGACCGTCGAGTTCGAAGACGGCAATGAAGGAATTGACGGTGGTAGATTCATGCGACACTCCGGCCTTGATGGCGTCGGCTTCCAGAGTCTCGGAGGCTTTCAGAAACTCGGCGGAGCCAACAAAGCGTGATGAGGATCCCGGAACCCTGAGCACTGCCGGGGCCGCGGCGCCTTCGTCAACGTCGGTCGGCGGAGATACTGGCTGCAGGGGGACAACAACGTGCGAGATGATGGCGACGTCATCTCCGGGGGGTTCGAGCGGGGGTGCTGAACATGCAGGGAAACCTCCGACTGAAGATCGGAAACGGAAGGGCCGGGAACCCGATGAATCGGAGTGCCACAGCGAGGATGTCTACGGTGAATCTGCTGAAGCCAAGAAACAAAACTGCGGATCATCATCTACTAAAAGATCCCGTGCTGCAGAGGTTCATAATCTCTCGGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATCCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGGATGGTACCAATGATGTTTCCCGGAATCCAACAGTATATGCCACCAATGGGGATGGGGATGGGGATGGGGATGGGCATGGGCATGGGCATGGGCATGGGCATGGAAATGGGAATGAATAGGCCACTAATGCCATTTCCCAATGTGTTAGCTGCTTCAGCTATGCCACCGGCGGCGGCAGCTCAATTGGGACCAAGGTTCCCTATGCCTCATTTCCAAATGCCTCATGCCCCTCAGCCTGATTCATCTAGAATGCAAGCAGCCGCTCCAAATCAACCGGAAAATAATATGCCTCCTTCTCTTGTCCCACCTGTTCCCAGTCAGTCACGGATCCCAAACTTTAGTGATCCTTATCAGCAATGCCTTGGTCCCCACCAGATGCATCTACAGTTCATGCAGAACCAGGCAATGAACAACCCAACTGTCAGCAAACCAAGTACCATTAAGAGCCATGAAAATGCAGAAAATAATCAACCCGGTCAACCAGAGTAA 1632 0.5263 MDDDEYPMPTSSSGVPRQKKPSVAQDDIMELLWQNGQVVMQSQNQRSQRKPQPERYPDSVIPAGPSTASEIRPSQQVEQHYQNQHVFMQEDEMISWLHYPIVDDPPLDHNFCADILYPQQPAVNNISMQNPDRKSQATELRQPSRSVAPRPPIPPPRKPEQVQTMIPNFAHFSKHNARVETGPSSSKTAMKELTVVDSCDTPALMASASRVSEAFRNSAEPTKRDEDPGTLSTAGAAAPSSTSVGGDTGCRGTTTCEMMATSSPGGSSGGAEHAGKPPTEDRKRKGREPDESECHSEDVYGESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGMGMGMGMGMGMGMGMEMGMNRPLMPFPNVLAASAMPPAAAAQLGPRFPMPHFQMPHAPQPDSSRMQAAAPNQPENNMPPSLVPPVPSQSRIPNFSDPYQQCLGPHQMHLQFMQNQAMNNPTVSKPSTIKSHENAENNQPGQPE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4463g00049 543 CDD bHLH_AtPIF_like 320 383 IPR047265 -
Pral4463g00049 543 Pfam Helix-loop-helix DNA-binding domain 324 370 IPR011598 GO:0046983
Pral4463g00049 543 MobiDBLite consensus disorder prediction 275 304 - -
Pral4463g00049 543 MobiDBLite consensus disorder prediction 307 321 - -
Pral4463g00049 543 MobiDBLite consensus disorder prediction 450 490 - -
Pral4463g00049 543 Gene3D - 315 378 IPR036638 GO:0046983
Pral4463g00049 543 MobiDBLite consensus disorder prediction 125 143 - -
Pral4463g00049 543 MobiDBLite consensus disorder prediction 234 268 - -
Pral4463g00049 543 MobiDBLite consensus disorder prediction 210 335 - -
Pral4463g00049 543 MobiDBLite consensus disorder prediction 125 161 - -
Pral4463g00049 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Pral4463g00049 543 SMART finulus 326 375 IPR011598 GO:0046983
Pral4463g00049 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 398 IPR036638 GO:0046983
Pral4463g00049 543 MobiDBLite consensus disorder prediction 40 69 - -
Pral4463g00049 543 FunFam Basic helix-loop-helix transcription factor 315 378 - -
Pral4463g00049 543 MobiDBLite consensus disorder prediction 147 161 - -
Pral4463g00049 543 MobiDBLite consensus disorder prediction 1 23 - -
Pral4463g00049 543 PANTHER TRANSCRIPTION FACTOR PIF3 16 482 IPR044273 GO:0003700|GO:0006355
Pral4463g00049 543 MobiDBLite consensus disorder prediction 514 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4463g00049 Pral-Chr4463 236227 241282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4463g00049 3 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.710 3.35e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4463g00049 HLH 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4463g00049 - - pcin:129287665 832.402