Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4463g00032 ATGGCTTTCTTCTCTGGAATCCGCCGCCTTATTCGCGATTCATCTTCTTCCTCGTCGATTCTCTATTCGCAACTTAGTTCGATTCGTCTTAGTTCAACTCTCACATCCCCCAGGCTTTTCGTCAGTGGTCTTTCAAGACTGACTACAGATGAAAAACTAAAGGAAGCATTTGCTCCTTTTGGGCAGCTGGTTGAAGCTAAGATCATAACTGATAGAATCTCTGGAAGATCAAAGGGATTTGGTTTTGTAAGTTACGCAAACATAGACGATGCTGAAAAGGCCAAAGAAGGAATGAATGCTAAGTTTTTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCAAGAGAACCTAAACCACTGCAGTCACAGCCTCAGCAATCTGAAACAGGTTTTACAGTTAACAAGACTGTTGGATGGTGTGGTTAG 429 0.4242 MAFFSGIRRLIRDSSSSSSILYSQLSSIRLSSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVEAKIITDRISGRSKGFGFVSYANIDDAEKAKEGMNAKFLDGWVIFVDPAKPREPKPLQSQPQQSETGFTVNKTVGWCG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4463g00032 142 SMART rrm1_1 38 111 IPR000504 GO:0003723
Pral4463g00032 142 SUPERFAMILY RNA-binding domain, RBD 36 127 IPR035979 GO:0003676
Pral4463g00032 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Pral4463g00032 142 MobiDBLite consensus disorder prediction 120 135 - -
Pral4463g00032 142 Gene3D - 12 128 IPR012677 -
Pral4463g00032 142 FunFam RNA binding protein 24 136 - -
Pral4463g00032 142 MobiDBLite consensus disorder prediction 117 142 - -
Pral4463g00032 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 105 IPR000504 GO:0003723
Pral4463g00032 142 PANTHER NUCLEOLAR PROTEIN 8 20 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4463g00032 Pral-Chr4463 134690 137632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4463g00032 39 135 Eukaryotic Initiation Factors Gene Family AT3G16380 26.804 2.08e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4463g00032 - - qsa:O6P43_006775 196.052