Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4463g00010 ATGAAAAGGGAGAGAGATTGCGAGACGAGCTTGGACTTGGCCAATTGTCTCATGCTGCTGTCTCACCGTTCTCACCAGCAAACAAAGACTGATAGTTTAGAATTTGAGTGCAAGACCTGCAGGCGGAAGTTCTCGTCGTTTCAGGCGCTGGGAGGGCACAGGGCGAGCCACAAGAGGCCGAAGCTCGACGGAGAAGACGACCTGAAAGCAGAGGCCAAATCTCTCAAGTTGGGGAACAGACCCAAGATGCACGAGTGCTCCGTTTGCGGGATGGAGTTCTCGTTGGGCCAAGCTCTTGGAGGCCACATGAGGAAGCACAGAGCCGCTCTTCACCCTGACACGAACCAAGTCGACCATGTGCTCGCCAAGGTCCCTGTTCTTAAGAGATCCAATAGTAAAAGGGTGTTTTGTTTGGACCTCAACCTAACGCCTCTCCAGAATGACTTGAACTTATTGTTTGGAAAGACGGCGCCCGCCTTCACTTGA 486 0.5267 MKRERDCETSLDLANCLMLLSHRSHQQTKTDSLEFECKTCRRKFSSFQALGGHRASHKRPKLDGEDDLKAEAKSLKLGNRPKMHECSVCGMEFSLGQALGGHMRKHRAALHPDTNQVDHVLAKVPVLKRSNSKRVFCLDLNLTPLQNDLNLLFGKTAPAFT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4463g00010 161 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Pral4463g00010 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Pral4463g00010 161 SUPERFAMILY beta-beta-alpha zinc fingers 81 107 IPR036236 -
Pral4463g00010 161 SMART c2h2final6 84 106 IPR013087 -
Pral4463g00010 161 SMART c2h2final6 35 57 IPR013087 -
Pral4463g00010 161 Pfam C2H2-type zinc finger 84 108 - -
Pral4463g00010 161 Pfam C2H2-type zinc finger 35 60 - -
Pral4463g00010 161 SUPERFAMILY beta-beta-alpha zinc fingers 32 61 IPR036236 -
Pral4463g00010 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Pral4463g00010 161 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Pral4463g00010 161 Gene3D Classic Zinc Finger 33 106 - -
Pral4463g00010 161 PANTHER ZINC FINGER PROTEIN ZAT5 7 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4463g00010 Pral-Chr4463 52274 53021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4463g00010 1 156 C2H2 Transcription Factor Family AT2G37430 51.765 1.16e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4463g00010 zf-C2H2_6 1.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4463g00010 - - pcin:129302030 267.314