Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4454g00002 ATGGGGATGATTGCGTGGTGGTGGTGGAGGAGGAGAAAATATGGCGATTCGGATTCAATAAGCAGATACGCCACTCATTCTCACATAGACGGTAGCAATGTCTACTTCGGAATCCCTGTTTTCTCGTATTCCGAGCTCGAAGCAGCCACCAACCATTTCGACCCTTCCACAGAACTCGGAGATGGAGGCTTCGGCACTGTTTATTATGGTAAGCTTGAAGACGGGCGAGAAGTTGCTGTAAAACGCTTATACGAGCAAAACTACAAACAAGTAGAACAGTTCATGAATGAAGTGAGGATCCTCACTCGTTTACACCACAAAAACCTTGTCACCCTCTATGGCTGCACCTCCCGCCGCAGCCAGGAACTCCTCCTCGTCTACGAGTTCATCCCAAACCGCACCGTCGCTCATCACCTCCACCTCCACAGAGATCCCAAAAAGCCCACCGTTTTACCATGGTCCACTCGCATGAAAATCGCTGTCCAAACCGCCAGAGCACTGGTCTACCTCCATGCCTCTGAAATCATTCACCGTGACATCAAAACCAACAACATTCTCCTCGACGAAGGATTCAATGTTAAGGTTGCCGATTTTGGACTCTCAAGGTTGTTCCCCAACAATGTCACTCACGTTTCCACTGCTCCACAAGGGACACCGGGGTATCTCGATCCCGAATATCATAGTTGCTATCAGCTCACCAGCAAAAGTGATGTTTATAGCTTTGGAGTTGTGCTCATTGAGCTCATAACATCCATGGAGGCGATCGACATGAGCCGGGACTCGGACTCCATAAACTTGTCGAGCTTAGCAGTGAGGAAGATTCAGAGGAGTGAGCTGAGCGAGCTGGTGGATCCTTCTCTTGGGTTTGAGAGTGATGGGGGGGTGAAGAGGATGGTGATATTGGTGGCTCAGTTGGCGTTTCAGTGTTTACAGACTAATAAGGAATTGAGACCTTCCATGGAGGAAGCTCTGGAGATGTTGGAGAGGATTCAAAGTGGGAGTGATCGGGTACAGGAGCACCCACGATTGCCACCGGAATCAGCAAAATGGGATGAGGTTGGGTTGTTGAAGAACGCAAATCCACCGCCTTATTCTCCCAACAGTGTTGCTGATAAATGGGGAAGCGAAACCACGACGCCCAATGTCAGTGCTTGA 1155 0.4952 MGMIAWWWWRRRKYGDSDSISRYATHSHIDGSNVYFGIPVFSYSELEAATNHFDPSTELGDGGFGTVYYGKLEDGREVAVKRLYEQNYKQVEQFMNEVRILTRLHHKNLVTLYGCTSRRSQELLLVYEFIPNRTVAHHLHLHRDPKKPTVLPWSTRMKIAVQTARALVYLHASEIIHRDIKTNNILLDEGFNVKVADFGLSRLFPNNVTHVSTAPQGTPGYLDPEYHSCYQLTSKSDVYSFGVVLIELITSMEAIDMSRDSDSINLSSLAVRKIQRSELSELVDPSLGFESDGGVKRMVILVAQLAFQCLQTNKELRPSMEEALEMLERIQSGSDRVQEHPRLPPESAKWDEVGLLKNANPPPYSPNSVADKWGSETTTPNVSA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4454g00002 384 Coils Coil 382 384 - -
Pral4454g00002 384 SMART serkin_6 53 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4454g00002 384 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 378 IPR044652 GO:0004672
Pral4454g00002 384 MobiDBLite consensus disorder prediction 361 384 - -
Pral4454g00002 384 ProSiteProfiles Protein kinase domain profile. 53 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4454g00002 384 SUPERFAMILY Protein kinase-like (PK-like) 38 351 IPR011009 -
Pral4454g00002 384 CDD STKc_IRAK 59 330 - -
Pral4454g00002 384 ProSitePatterns Protein kinases ATP-binding region signature. 59 81 IPR017441 GO:0005524
Pral4454g00002 384 Gene3D Transferase(Phosphotransferase) domain 1 131 340 - -
Pral4454g00002 384 FunFam Wall-associated receptor kinase-like 20 130 340 - -
Pral4454g00002 384 Pfam Protein kinase domain 56 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4454g00002 384 Gene3D Phosphorylase Kinase; domain 1 26 129 - -
Pral4454g00002 384 MobiDBLite consensus disorder prediction 333 384 - -
Pral4454g00002 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Pral4454g00002 384 MobiDBLite consensus disorder prediction 333 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4454g00002 Pral-Chr4454 16868 18441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4454g00002 11 384 Receptor kinase-like Gene Family AT1G25390 60.526 5.50e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pral4454g00002 Pkinase 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4454g00002 - - aip:107643858 511.916