Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4452g00006 ATGAGTTGCTTTCCGTGTTGTGCAACGAAAGAAAGGACCAACCGGAAGACATTGCAGAAGAGCAGCAAGGAGTACCATGCTTCAAAATCTATAGCCTCATTTGCCAACATTTCTTTTAAAAGTGATGCCAGCAGGCAAAGATACATAACGGAAGAAATTAAGAAGATTGGAAAAGGAAATATTACTGCTAAAATCTTCAGCTATCGAGAGCTATGCGTTGCAACTCAGAATTTTCATCAAGATAACCTAGTTGGCGAAGGAGGCTTTGGCAGGGTATACAAGGGATATCTGGAAAGCACGAATCAAGTTGTTGCGGTGAAGCAACTTGATAGGAATGGATTTCAAGGAAACAGAGAATTTCTCGTCGAGGTTTTGCTTTTAAGTCTCTTGGACCACCCCAACCTCGTCCATTTGGTAGGTTATTGTGCTGATGGTGATCAAAGAATTTTAGTCTACGAATACATGGTCAATGGTTCTTTAGAAGATCACCTCCTTGAATTAACTGAAGATAAAAAGCCGTTGGACTGGACTACCAGAATGAAAATTGCTCAGGGTGCGGCTGAAGGACTTGAATATTTACACGAGGTAGCAGACCCACCAGTGATATACAGAGATTTCAAGCCATCAAATATACTATTGGATGAAGATTTTAATCCAAAACTTTCTGATTTTGGGCTAGCAAAACTTGGTCCAACTGGCGAACACTCCCATGTGTCCACAAGAGTGATGGGAACTTATGGCTACTGTGCTCCTGAGTACGCGCTTACTGGGCAGTTGAGTACAAAATCAGACGTATATAGTTTTGGGGTTGTCTTCTTAGAAATGATATCCGGAAGAAGAGTGATTGATCATTCAAGGCCAACTGAAGAGCAAAATTTAGTCCTTTGGGTATTTCTTCAAACCTTATTGAATGCGCAACCGCTATTGAAAGACAAAAGAAAGTTCACATTAATTGCCGATCCCTTACTAAAAGATGATTACCCCATGAAGGGGTTGTACCAGGCGCTAGCAGTTGCAGCGATGTGTCTCCAGGAGGAAGCTTCTACTCGGCCTTTGATTAGCGACGTAGTCTCTGCAATGGAGTTCCTCGCTGAGAAGAATGTGAAAGGTGATGATGAAGAAAGTGATGAACATATTTTTTACTCTTCTACTGAGGATGACGACGGGGACTGTAGTACTGAAGGCTATGAATCTGATAGCATTCTTGATCGGAAGAAACAAGGTTACTAA 1230 0.4171 MSCFPCCATKERTNRKTLQKSSKEYHASKSIASFANISFKSDASRQRYITEEIKKIGKGNITAKIFSYRELCVATQNFHQDNLVGEGGFGRVYKGYLESTNQVVAVKQLDRNGFQGNREFLVEVLLLSLLDHPNLVHLVGYCADGDQRILVYEYMVNGSLEDHLLELTEDKKPLDWTTRMKIAQGAAEGLEYLHEVADPPVIYRDFKPSNILLDEDFNPKLSDFGLAKLGPTGEHSHVSTRVMGTYGYCAPEYALTGQLSTKSDVYSFGVVFLEMISGRRVIDHSRPTEEQNLVLWVFLQTLLNAQPLLKDKRKFTLIADPLLKDDYPMKGLYQALAVAAMCLQEEASTRPLISDVVSAMEFLAEKNVKGDDEESDEHIFYSSTEDDDGDCSTEGYESDSILDRKKQGY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4452g00006 409 SUPERFAMILY Protein kinase-like (PK-like) 61 362 IPR011009 -
Pral4452g00006 409 Pfam Protein kinase domain 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4452g00006 409 CDD STKc_IRAK 84 361 - -
Pral4452g00006 409 PANTHER OS07G0668900 PROTEIN 3 369 - -
Pral4452g00006 409 MobiDBLite consensus disorder prediction 368 409 - -
Pral4452g00006 409 Gene3D Transferase(Phosphotransferase) domain 1 155 388 - -
Pral4452g00006 409 ProSiteProfiles Protein kinase domain profile. 78 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4452g00006 409 Gene3D Phosphorylase Kinase; domain 1 37 154 - -
Pral4452g00006 409 MobiDBLite consensus disorder prediction 368 385 - -
Pral4452g00006 409 FunFam Serine/threonine-protein kinase PBS1 155 378 - -
Pral4452g00006 409 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Pral4452g00006 409 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Pral4452g00006 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4452g00006 Pral-Chr4452 55145 61043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4452g00006 1 364 Glycoside Hydrolase AT3G07070 60.434 7.30e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pral4452g00006 Pkinase 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4452g00006 - - qsa:O6P43_021135 597.816