Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4451g00083 ATGGCTAAGAAGCGAAAGCTTCGATCATCTGAGCCCGAATCTGCCAAGACCTCCGATTCACAACCTGCGCAACAAGAACAACCCCAAGAAGAGCAAATCCACGAGGAAGTTAGAGTGGACGAACAACCAAACCCCGAAGCAACCCTAGAAGAAGAGCACCAGGGACCCGACACGATGGCCGTGGACGATGATACGCATCAGGAGGAGGTAAAATTGGAAGAAAGCGCGGATGTAAGTGTACCTCCAGAAGTTCACGCTGAAGAGCAGGATAGCGAGCACCCCGAAACGGCGGAAGGTGTAGCCGATGCTGCCCCATCTGAATCAGCTCAGGTTGATGCGAATGGAGCTGAGGAAGGCAACGATAACGATGATGAAGTTGAGGTTTTGGACGAAGAGGAGCCTTTAGAGAAGCTTCTTGAGCCTTTTACGAAGGAGCAGCTCTACACTCTTGTAAAGCAAGCTGCGGAGAAGTACCCGGATTTTATCGACAACGTCCGTCAGCTGGCGGACGTGGACCCTGCCCACCGAAAAATCTTCATCCACGGTCTTGGCTGGGACACCACTGCTGAAACACTCACGAGTGTTTTTGGGAAGTATGGTGAGATTGAGGATTGCAAGGCTGTCATCGATAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCCTGTTCAAGCACCGAAGTGGGGCTCGGAAGGCGCTGAAACAGCCCCAGAAAAAGATTGGGAACCGAACCACATCGTGTCAATTGGCATCCGCGGGACCAGTCCCATCGCCTGCTGCAGTGGCCCCACCGGTGTCCGAGTATACACAAAGGAAGATCTTTGTTAGCAATGTAAGTGCAGACCTCGATCCCCAAAAATTGCTTGAGTTCTTTGGTCAATTTGGGGAGATAGAGGATGGTCCTCTGGGTCTTGATAAACATACGGGTAAGCCAAAGGGATTTGCACTGTTTGTATACAAGTCAGTAGAGAGCGCAAAGAAGGCTTTAGAAGAACCGCACAAAAACTTTGAAGGGCATACATTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCAGCATCACCAGCAGCAGCAGCAGCATTCTCATCATCATCAACCTCATTATCAGCCAAGAAAGGATAAGAATAAGTATCAGCCTAGCGGTCATGGACCAGGGCCTGGACACCTGATGGCACCCTCAGCTCCTTCCGTAGGTTTCAATCCTGGAGTGGCTGCACAGGGGCTAAATCCGGCACTTGGGCAGGCCTTGACTGCTTTGCTTACTACTCAAGGCGCTGGGCTAGGGCTGGGTAACCTGCTTGGAGGTCTTGGTGGTGCACCCGCAAACCAGGCTGGGCCTCCTGCTGGATATGTCAACCAGCCTGCTGTGGGCTACGGGAACCAACCGGGAATGCAAGGGGGATACCAAAATCCACAAATGGGGCAGAGCAGTGGTGTTAGGCCTCATCCTGGCCCTGGCGCTCCTTATATGGGTCATTAG 1497 0.5184 MAKKRKLRSSEPESAKTSDSQPAQQEQPQEEQIHEEVRVDEQPNPEATLEEEHQGPDTMAVDDDTHQEEVKLEESADVSVPPEVHAEEQDSEHPETAEGVADAAPSESAQVDANGAEEGNDNDDEVEVLDEEEPLEKLLEPFTKEQLYTLVKQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVIDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAAVAPPVSEYTQRKIFVSNVSADLDPQKLLEFFGQFGEIEDGPLGLDKHTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYQHHQQQQQHSHHHQPHYQPRKDKNKYQPSGHGPGPGHLMAPSAPSVGFNPGVAAQGLNPALGQALTALLTTQGAGLGLGNLLGGLGGAPANQAGPPAGYVNQPAVGYGNQPGMQGGYQNPQMGQSSGVRPHPGPGAPYMGH 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4451g00083 498 SUPERFAMILY RNA-binding domain, RBD 258 370 IPR035979 GO:0003676
Pral4451g00083 498 Gene3D - 262 387 IPR012677 -
Pral4451g00083 498 Gene3D - 86 261 IPR012677 -
Pral4451g00083 498 MobiDBLite consensus disorder prediction 467 498 - -
Pral4451g00083 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Pral4451g00083 498 SMART rrm1_1 177 249 IPR000504 GO:0003723
Pral4451g00083 498 SMART rrm1_1 273 345 IPR000504 GO:0003723
Pral4451g00083 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 342 IPR000504 GO:0003723
Pral4451g00083 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Pral4451g00083 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Pral4451g00083 498 MobiDBLite consensus disorder prediction 29 97 - -
Pral4451g00083 498 MobiDBLite consensus disorder prediction 1 125 - -
Pral4451g00083 498 MobiDBLite consensus disorder prediction 14 28 - -
Pral4451g00083 498 MobiDBLite consensus disorder prediction 348 401 - -
Pral4451g00083 498 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 89 359 - -
Pral4451g00083 498 MobiDBLite consensus disorder prediction 469 483 - -
Pral4451g00083 498 MobiDBLite consensus disorder prediction 362 376 - -
Pral4451g00083 498 SUPERFAMILY RNA-binding domain, RBD 165 254 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4451g00083 Pral-Chr4451 647005 650399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4451g00083 251 351 C2H2 Transcription Factor Family AT2G19380 29.703 1.60e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4451g00083 K12741 - gmx:100783742 579.711