LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4451g00026	ATGTCGGATGACATGCTTGTGCATTTCTCTTCCAACTCCTCTAACCAATCGGATCAATCCTTGCCTACCAAGATTGCAAAGCTTGAAGCTCGAATGGTAGGCAAGGCTTCGTCCGCAGTTGCCACCACTCTGTCGCCTGCCCAGCAGTCAACCTGGTCTACTGTTCCTTCAGCTGCGAAATTTGGGGGACCTGCCGAGGATTTGGTTGGACCCTCCACTTCGAGTGATTCCGATGATGATAATGGCGGGGAATTCCTCATACAAGCCAACACACAGAAGCGCCAAAAACTCCAAGAAGATGACCACTCAAAGATTTTTGAACATGTCGAGGTAGTTACTGATGGAAGGCAAACTAGCTTGGATGTTGTGGAGGCAAAAGCTAGTGCAGATACGAATAGGAAAAAAAATGGTCGTGGAAGAGGGAGCTCTGGTTCTGGTAGGGGACGTGGTTCCCGAGTTACTGATCAGAACAGAACACATATATCTCCTCCAGCAGTTTTGGCCTCCAATGGTCAGCTGGACAATGCATGCCGAGAGGGAAGACTGAAAGATCAGATTCGCAACGACAATTGCACTTCATTAGAGGAGGAGAATGCATCTTTACGTGCAAAAGTTGTTGCATTGGAGGAGGATCTGAGGAAATCAAAACAAGAGATGTCTGATTACCAGAATCTTTGTCGCCAGTTAGAAAAGGAACTAAAGGATCTGAAAGATCACGAACAGCAAATGAAGCCTAAGAGGACAAAAATAATATCTGATTTGCTGATATCAGTCTCAAAGTCCGAGAGGCAAGAAGCAAGGTTGAAAGTACGACAAGACTCATTGAGGCTGGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCATATCGGAGACTTGGGAAGATGGGCAAGCATTGAAGGATCTTAATGCCCAGCTTAAACAACTGATAGAAACGAAAGAGGCTATTGAGCGGCAGCGCAAGTCATTGAAGAAAAAACAATCTGATAAAGGCGAGGGAACAGATGCAGATACTGGATTACAAGAAGACGATGTCGTCATTCAGGATGAAATCTATAAGTCTCGACTAGCTAGCATTAAACGTGAAGAAGAAGTTATTATGCGGGAGAGGGATCGCTATGAACTAGAAAAGGGAAGACTAATACGTGAGATGAAACGCATACGAGATGAGGATGGCTCACGATTCAACAACTTTCAGATTCTGAACCATCGATATGCCCTGTTAAATCTTCTTGGAAAGGGTGGATTCAGCGAGGTTTACAAGCAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCATGTAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGTTATATTCGGCATGCAATTCGGGAGTATAATATCCACAAGACCTTGGTACATCATCATATTGTTCGTTTGTGGGACATCTTTGAAATAGATCACAATACATTCTGCACCGTTTTAGAGTACTGTAGTGGGAAGGATCTTGATGCTGTCCTTAAGGCAACACCTATATTGCCTGAGAGAGAGGCGAGGGTAATTCTAGTTCAGGTTTTTCAAGGCCTTGTTTACTTGAATAAAAGAACGCAGAAGATTATTCATTATGATTTGAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGCATTGCCAAAGTGACTGATTTTGGTCTCAGCAAAATAGTTGAGGATGATGTGGGATCCCAGGGTATGGAACTAACATCTCAGGGGGCTGGAACTTACTGGTATTTGCCCCCAGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCGAAGGTTGATGTCTGGTCTGCGGGTGTTTTGTTCTATCAAATGCTCTTTGGAAGGCGTCCATTTGGCCATGACCAAAGTCAAGAGCGTATACTACGCGAAGATACAATTATTAAGGCTCGCAAGGTTGAATTCCCTTCTAGACCTACGGTTTCTAATGAGGCGAAGGATTTTATACGGCGATGTTTGACATATAACCAGGCCGAGAGACCAGATGTATTGACCATTGCTCAAGATCCATATCTTACCTACTCAAAGAAGTAA	2055	0.438	MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKASSAVATTLSPAQQSTWSTVPSAAKFGGPAEDLVGPSTSSDSDDDNGGEFLIQANTQKRQKLQEDDHSKIFEHVEVVTDGRQTSLDVVEAKASADTNRKKNGRGRGSSGSGRGRGSRVTDQNRTHISPPAVLASNGQLDNACREGRLKDQIRNDNCTSLEEENASLRAKVVALEEDLRKSKQEMSDYQNLCRQLEKELKDLKDHEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLIETKEAIERQRKSLKKKQSDKGEGTDADTGLQEDDVVIQDEIYKSRLASIKREEEVIMRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKQAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAVLKATPILPEREARVILVQVFQGLVYLNKRTQKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGVLFYQMLFGRRPFGHDQSQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTYSKK	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4451g00026	684	ProSiteProfiles	Protein kinase domain profile.	405	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4451g00026	684	MobiDBLite	consensus disorder prediction	43	57	-	-
	Pral4451g00026	684	Coils	Coil	191	242	-	-
	Pral4451g00026	684	SUPERFAMILY	Protein kinase-like (PK-like)	397	680	IPR011009	-
	Pral4451g00026	684	Coils	Coil	356	390	-	-
	Pral4451g00026	684	MobiDBLite	consensus disorder prediction	124	168	-	-
	Pral4451g00026	684	Gene3D	Transferase(Phosphotransferase) domain 1	396	684	-	-
	Pral4451g00026	684	MobiDBLite	consensus disorder prediction	147	168	-	-
	Pral4451g00026	684	MobiDBLite	consensus disorder prediction	70	84	-	-
	Pral4451g00026	684	FunFam	Serine/threonine-protein kinase TOUSLED	396	684	-	-
	Pral4451g00026	684	Pfam	Protein kinase domain	406	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4451g00026	684	CDD	STKc_TLK	404	678	-	-
	Pral4451g00026	684	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pral4451g00026	684	Coils	Coil	299	329	-	-
	Pral4451g00026	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	532	544	IPR008271	GO:0004672\|GO:0006468
	Pral4451g00026	684	SMART	serkin_6	405	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4451g00026	684	PANTHER	MIXED LINEAGE PROTEIN KINASE	11	683	-	-
	Pral4451g00026	684	MobiDBLite	consensus disorder prediction	43	84	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4451g00026	Pral-Chr4451	195937	206831	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4451g00026	388	684	MAP Kinase Kinase Kinase	AT3G13530	28.000	5.02e-27	115

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Pral4451g00026		Pkinase	2.5e-57	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4451g00026	K08864		-	gmx:100805168	1125.92