LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4451g00025	ATGTCGGATGACATGCTTGTGCATTTCTCTTCCAACTCCTCTAACCAATCGGATCAATCCTTGCCTACCAAGATTGCAAAGCTTGAAGCTCGAATGGTAGGCAAGGCTTCGTCCGCAGTTGCCACCACTCTGTCGCCTGCCCAGCAGTCAACCTGGTCTACTGTTCCTTCAGCTGCGAAATTTGGGGGACCTGCCGAGGATTTGGTTGGACCCTCCACTTCGAGTGATTCCGATGATGATAATGGCGGGGAATTCCTCATACAAGCCAACACACAGAAGCGCCAAAAACTCCAAGAAGATGACCACTCAAAGATTTTTGAACATGTCGAGGTAGTTACTGATGGAAGGCAAACTAGCTTGGATGTTGTGGAGGCAAAAGCTAGTGCAGATACGAATAGGAAAAAAAATGGTCGTGGAAGAGGGAGCTCTGGTTCTGGTAGGGGACGTGGTTCCCGAGTTACTGATCAGAACAGAACACATATATCTCCTCCAGCAGTTTTGGCCTCCAATGGTCAGCTGGACAATGCATGCCGAGAGGGAAGACTGAAAGATCAGATTCGCAACGACAATTGCACTTCATTAGAGGAGGAGAATGCATCTTTACGTGCAAAAGTTGTTGCATTGGAGGAGGATCTGAGGAAATCAAAACAAGAGATGTCTGATTACCAGAATCTTTGTCGCCAGTTAGAAAAGGAACTAAAGGATCTGAAAGATCACGAACAGCAAATGAAGCCTAAGAGGACAAAAATAATATCTGATTTGCTGATATCAGTCTCAAAGTCCGAGAGGCAAGAAGCAAGGTTGAAAGTACGACAAGACTCATTGAGGCTGGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCATATCGGAGACTTGGGAAGATGGGCAAGCATTGAAGGATCTTAATGCCCAGCTTAAACAACTGATAGAAACGAAAGAGGCTATTGAGCGGCAGCGCAAGTCATTGAAGAAAAAACAATCTGATAAAGGCGAGGGAACAGATGCAGATACTGGATTACAAGAAGACGATGTCGTCATTCAGGATGAAATCTATAAGTCTCGACTAGCTAGCATTAAACGTGAAGAAGAAGTTATTATGCGGGAGAGGGATCGCTATGAACTAGAAAAGGGAAGACTAATACGTGAGATGAAACGCATACGAGATGAGGATGGCTCACGATTCAACAACTTTCAGATTCTGAACCATCGATATGCCCTGTTAAATCTTCTTGGAAAGGGTGGATTCAGCGAGGTTTACAAGCGACTTAAAGTGAGAAATTTCCAGCAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCATGTAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGTTATATTCGGCATGCAATTCGGGAGTATAATATCCACAAGACCTTGGTACATCATCATATTGTTCGTTTGTGGGACATCTTTGAAATAGATCACAATACATTCTGCACCGTTTTAGAGTACTGTAGTGGGAAGGATCTTGATGCTGTCCTTAAGGCAACACCTATATTGCCTGAGAGAGAGGCGAGGGTAATTCTAGTTCAGGTTTTTCAAGGCCTTGTTTACTTGAATAAAAGAACGCAGAAGATTATTCATTATGATTTGAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGCATTGCCAAAGTGACTGATTTTGGTCTCAGCAAAATAGTTGAGGATGATGTGGGATCCCAGGGTATGGAACTAACATCTCAGGGGGCTGGAACTTACTGGTATTTGCCCCCAGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCGAAGGTTGATGTCTGGTCTGCGGGTGTTTTGTTCTATCAAATGCTCTTTGGAAGGCGTCCATTTGGCCATGACCAAAGTCAAGAGCGTATACTACGCGAAGATACAATTATTAAGGCTCGCAAGGTTGAATTCCCTTCTAGACCTACGGTTTCTAATGAGGCGAAGGATTTTATACGGCGATGTTTGACATATAACCAGGCCGAGAGACCAGATGTATTGACCATTGCTCAAGATCCATATCTTACCTACTCAAAGAAGTAA	2079	0.4372	MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKASSAVATTLSPAQQSTWSTVPSAAKFGGPAEDLVGPSTSSDSDDDNGGEFLIQANTQKRQKLQEDDHSKIFEHVEVVTDGRQTSLDVVEAKASADTNRKKNGRGRGSSGSGRGRGSRVTDQNRTHISPPAVLASNGQLDNACREGRLKDQIRNDNCTSLEEENASLRAKVVALEEDLRKSKQEMSDYQNLCRQLEKELKDLKDHEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLIETKEAIERQRKSLKKKQSDKGEGTDADTGLQEDDVVIQDEIYKSRLASIKREEEVIMRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKRLKVRNFQQAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAVLKATPILPEREARVILVQVFQGLVYLNKRTQKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGVLFYQMLFGRRPFGHDQSQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTYSKK	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4451g00025	692	PANTHER	MIXED LINEAGE PROTEIN KINASE	11	691	-	-
	Pral4451g00025	692	Pfam	Protein kinase domain	406	687	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4451g00025	692	MobiDBLite	consensus disorder prediction	43	57	-	-
	Pral4451g00025	692	Coils	Coil	191	242	-	-
	Pral4451g00025	692	CDD	STKc_TLK	404	686	-	-
	Pral4451g00025	692	Coils	Coil	356	390	-	-
	Pral4451g00025	692	MobiDBLite	consensus disorder prediction	124	168	-	-
	Pral4451g00025	692	Gene3D	Transferase(Phosphotransferase) domain 1	396	692	-	-
	Pral4451g00025	692	MobiDBLite	consensus disorder prediction	147	168	-	-
	Pral4451g00025	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	540	552	IPR008271	GO:0004672\|GO:0006468
	Pral4451g00025	692	MobiDBLite	consensus disorder prediction	70	84	-	-
	Pral4451g00025	692	FunFam	Serine/threonine-protein kinase TOUSLED	396	692	-	-
	Pral4451g00025	692	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pral4451g00025	692	Coils	Coil	299	329	-	-
	Pral4451g00025	692	SMART	serkin_6	405	687	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4451g00025	692	ProSiteProfiles	Protein kinase domain profile.	405	687	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4451g00025	692	SUPERFAMILY	Protein kinase-like (PK-like)	397	688	IPR011009	-
	Pral4451g00025	692	MobiDBLite	consensus disorder prediction	43	84	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4451g00025	Pral-Chr4451	195937	214102	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4451g00025	388	692	MAP Kinase Kinase Kinase	AT3G13530	27.597	4.26e-26	113

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Pral4451g00025		Pkinase	5e-55	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4451g00025	K08864		-	gmx:100805168	1122.84