Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4450g00005 ATGTCGCACACAGAAGTACAGAACCCTCAACAGCTTCGTCAAAATCCAATGTCCCCTGCGCAGCGCAACAATTCCTTGACCATCGACTCTGACCTCGACGGCATCGACCTTGACCCCTCCGATTTCGGCTCCTCCATCCCTCTCAAGAAGGTCCCCAACGGTGATGCTTTCGCCGCCTCTCGCGCCGGCGATGTTGACCGCCTCCGTTACCTCCTCGAGTCCGGAGTCAACGTCAATGCTCGGGACCAGTGGGACTCTGTTGCTCTCTACTATGCTTGCCTTGCCGGTCACCTCGATGCTGCTCGCATGTTGCTCGAGAGTGGTGCCATCTGCTCTGAGCACACATTCGACGGTGACCGTTGCCACTATGCCGCCCTTAATTTGAAGGTCAGGAAGTTGTTGAAAGCATTTGAGGCAAGACCGCCGCCTCTGGGTCCCTTGCAGGCGGCGCTGAGAGATACTTTCTTGGGTTGTGCCGCTAATAGGGCCTACTTGGAGCTTGCTGATTCTCAATTTCAAATTTCTGGTATATCATCAACTCAGGGACCCAATTGCAACCACTTTCCTCCGGATGTGGTTTTCTATGTATCAGGAAGGCCTATTGAGGCTCACAGAGTCATATTAATTGCAAGGTCACCATTTTTCAAGAAAAAGTTTGAGAGTGATTGGAAAGAGCGCAGGGAAGTAAGATTCTCCAAGGAGAAATTGTCCTTTCCTGCTCTCTTTAGCCTGTTGCACTTCTTTTATTCTGACAGATTAGAGATTGCTGTAGATGACATGGAAGATCTTGTGAGAATCTGTAAAGTGTGCAAATGCGAATCACTACAGACAATTCTGGAGAAAGAACTAATTCATCAAAAATATGCAGAGTATAAAGCACTGAGAGATTTGGACAATTCTCAAAAACGGTTCATTTTACAGGGTTTATCCCTTCCTGAAGAAGACAGGCTTCCTGCAGCCTTGCATCGAATTCTTTGGATTGCCCTTTCAAATTCAAATCAAGCAAATGTCCTAGATGGTGGAATTGATAAATTAGCTTTTCGGGTGGATGCAATGCAGATTGCTAATTCTAAGGATGATCTTGCTGATGTTTGTATTAGAGTTGATAAAAAAGTTTTTCGTTGCCATCAAGTTATTTTAGCATCAAGGTCAGAATACTTCAAAGCAAGATTGTCACGGATACAGGACTTCCATGAAGGGAAAGATGAGTCATCTGTTGATTCCCTTCCTTGTCTTGAAGAACGTGATTTGAGCAAGGAATCATTTGAGAAAATGATCGAGTATATGTATACTGATGGTCTGAAGGATATTGATCCAGATCAGGCAGAGGAAATGTTTGATGCTGCTTCTAGATATTTATTGTTTCCTCTAAAGCGTGCTGTGGCTGATGCACTGCTGCCACACTTGGAAATGGCTTCCCCTGCAGAACTTTGCCATTGGTTGATAGTGGCAGACATGTATGGTGTTCTGAAGATACGGGAATATTGTCTAGATACCATAGCTTGTAATTTTGAAACATTTGCTGATACTAAAGAATTCCGAGCAATGCTGTTGACGCTGCCGCCACCGTCTGGAGATTCCTCTCTACGTACTACTGCCCCAAGTGTTCCTGGGGCTGCTCTAAATACTGATCAAGGCAATCTTCTTGATGATTTACGAGAGAAATGGCTTGAAGTTGAAGCTGCTGAGCTTGACCAGAGAGATGAGAGCGCATTGCAGTTTGACAAGCGTCTAGAAATGCTTATGCTTGTTGCAGAGCAAGAAAAATTAGGCAATACTGAATCAGATGATATTGAGAATGTGGCGTCCTCAGCTCTTTCTGAAACCTCTACTCAAATTTCTACTGAACTAGAACTGTAG 1860 0.4489 MSHTEVQNPQQLRQNPMSPAQRNNSLTIDSDLDGIDLDPSDFGSSIPLKKVPNGDAFAASRAGDVDRLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQAALRDTFLGCAANRAYLELADSQFQISGISSTQGPNCNHFPPDVVFYVSGRPIEAHRVILIARSPFFKKKFESDWKERREVRFSKEKLSFPALFSLLHFFYSDRLEIAVDDMEDLVRICKVCKCESLQTILEKELIHQKYAEYKALRDLDNSQKRFILQGLSLPEEDRLPAALHRILWIALSNSNQANVLDGGIDKLAFRVDAMQIANSKDDLADVCIRVDKKVFRCHQVILASRSEYFKARLSRIQDFHEGKDESSVDSLPCLEERDLSKESFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADALLPHLEMASPAELCHWLIVADMYGVLKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTAPSVPGAALNTDQGNLLDDLREKWLEVEAAELDQRDESALQFDKRLEMLMLVAEQEKLGNTESDDIENVASSALSETSTQISTELEL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4450g00005 619 FunFam BTB/POZ domain-containing protein 50 173 - -
Pral4450g00005 619 SUPERFAMILY Ankyrin repeat 58 135 IPR036770 -
Pral4450g00005 619 Pfam BTB/POZ domain 357 465 IPR000210 GO:0005515
Pral4450g00005 619 Pfam BTB/POZ domain 187 286 IPR000210 GO:0005515
Pral4450g00005 619 Gene3D Potassium Channel Kv1.1; Chain A 351 511 IPR011333 -
Pral4450g00005 619 SMART BTB_4 362 469 IPR000210 GO:0005515
Pral4450g00005 619 SMART BTB_4 190 287 IPR000210 GO:0005515
Pral4450g00005 619 FunFam BTB/POZ domain-containing protein 184 306 - -
Pral4450g00005 619 Gene3D - 36 181 IPR036770 -
Pral4450g00005 619 MobiDBLite consensus disorder prediction 592 619 - -
Pral4450g00005 619 CDD BACK 478 516 - -
Pral4450g00005 619 CDD BTB_POZ_ZBTB_KLHL-like 361 452 - -
Pral4450g00005 619 ProSiteProfiles Ankyrin repeat profile. 59 83 IPR002110 GO:0005515
Pral4450g00005 619 ProSiteProfiles BTB domain profile. 190 257 IPR000210 GO:0005515
Pral4450g00005 619 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 27 585 IPR044515 -
Pral4450g00005 619 SUPERFAMILY POZ domain 352 468 IPR011333 -
Pral4450g00005 619 SUPERFAMILY POZ domain 185 285 IPR011333 -
Pral4450g00005 619 ProSiteProfiles BTB domain profile. 362 438 IPR000210 GO:0005515
Pral4450g00005 619 MobiDBLite consensus disorder prediction 596 619 - -
Pral4450g00005 619 Pfam Ankyrin repeats (many copies) 58 105 IPR002110 GO:0005515
Pral4450g00005 619 Gene3D Potassium Channel Kv1.1; Chain A 184 305 IPR011333 -
Pral4450g00005 619 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4450g00005 Pral-Chr4450 16621 21687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4450g00005 10 142 MAP Kinase Kinase Kinase AT3G59830 35.374 6.38e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral4450g00005 BTB 1.9e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4450g00005 K10520 - qsa:O6P43_020762 976.081