LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4449g00010	ATGGATCAGGTGCAGAAATTGGAGCAGCAAATGAAGGATAGCAATAGTTGCTGTCAAGGAAGGTGTCCTACTTGGAGGAAATATCGTTTGTGCAGACAAATGACAAAGATGATCGCGGCAACAAAGAATCTCAATCAAAGGAGTGAATTTAATCCCTTTTCTACCCTCGTCCCAATACCAGATGTAGAGTACTTTTCTTCTGGAAATTTTGTGTATTTCCAGTCTACAAAGCTGGCTTCAGATCAATTGTTGGCTGCTCTCCAAGATGATGATGTTCGTACGATTGGACTGTATGGAATGGGGGGCTGTGGCAAAACAACATTGGTAAAAGAAGTAGGCAAAGAAGCCAAGAAATCAAACCTTTTTGATCTAGTCATATTGACAACTGTGTCCCAAACCCTGAATATTAGAAAGATTCAAGATGAGATTGCAGATATGTCCGGTTTGAAATTCGAAGAACAAAGTGATGAAGGAAGAGCTAGACGTTTATCGATGAGATTGAGCAATGGAGAAAGAATTCTTGTAATATTGGATGATGTGTGGGCTATGTTTGATTTGAAGAAAGTCGGTATCCCTCTTGAAGATTATCGTGGTTGCAAGATCCTTCTTACCACTCGACGCCTACCAGTATGCAATATGATGAATTGTGATAGAAAGATTCCCTTGGAGCTTTTATCTAATGAGGAATCTTGGACATTGTTCCAAAAACACGCTCGTACTATTGATGAATCATTGAGTAGTGTGGCACAAGGAATTGTAAGGGAATGCAAAGGACTTCCTATTGCAATTCAAGCCGTAGGAGCCTCCTTGAAAGGAAAGTCTGTAGCAGAATGGAAGGAAGCATTAAAAAGATTAACGAATTCAAAACCAATGGATGTGGAAGAAGGTGTCAGAGATGCTTTTTCTTGTCTTCGGTTGAGTTACGATTATTTAAGGAACAACGAAGCTAAGTCACTCTTCTTGAAATGCTGCATGTATCCAGAAGACACATATATCTCTATTGAAAATTTGTTCAGAATCATGATGGGTTTGGGCATGTGTGAAGAATTGGACTCTCTTGAAGAAGCAAGAAACAAAGTGGATGCATGTGTAAATATTCTTGTGAATTCTTGTTTGCTAATGCATTACGAGGAATATGGAGGCCGATTGAGAATGCATGATGTAGTTCGTGATGTAGCGTTGTGGATATCACGTCAAGAAAATCGTAATATTGTAGTGAATCTTGAGAAGGATATGAAGATGGCAACAAATGGGTCTATAAAAGATTGTTACGCATTCACTTTTTGGTGCAATGAAAAATCCCAATTTCCTCCACGATTAGATGCTCCAAAACTAGAGATTTTGCTGCTAAATGATGTAGGCGATGAATGTGAATTATCGAAAGCAAATTTTGGAGGTATGGGATTGCTCAGGGTTTTGCAGATTGATTGTCTATATGATGGCATTGTAAGATCCCACTTGTTATCATTGCCACACTCTATGAATTTGCTAACTAATCTACGAACCCTGCGCTTGCGATTCCATCAATTAGGTGATGATTTGTCATGGGTGTTAGGCCTCAAAAGACTCGAAGTTCTTGACTTGAAATATAGTCGGTTTGAGGATCTGCCACAAGGATTGGAAGCGTTGAGTAAATTGAAGCTGTTAGATTTACATTATATTGGGGAGCAAAGTTTTAAGATAATAAAAAGATGCACACAACTACAAGAGTTATATGTTCAGAAAATCAGAACAACTTTAAGACCTGGTAAATGTTTATTGAAAGATGCTGGTTTTCCTAGATTGAAGAGATATAAACTTCAAATTATTAACAAGTATAGTGATGGTACATCCAGTGGTGATCATCAACATTTGATGCATTTTCATTCCAAGGCTTTATCCTTGGAAGAGTTAAAAATCTCTGCCTTAAGTCCATTTATTAAAGATCTTTTGCAACAAGCAGAATTTGTTTGTTTGTATAGATGTGATGTGGGTCCTCCTCTGCTTTGCTTCTTTGAGGAATTACAAGAACTACATATATCCCATTGCCCTAAGCTGACATCGCTGTTTCCACAATGTGTTGTGAGAGCTATGCTATTGTTACAAAAGCTAAATATAAATGGTTGTAGTGAGCTGAAGAATATAATAGAGGAGGATGGTGATAGTACTAACAATGAAATAATTTCAGCTTCAAACAATAGTGTATATTTGGTGTTCTCAAAATTGAAAAGTTTGACCATAATTGATTGTGATAAGTTAGAATATATATTCTCGAACTCTTGTGTACGAGGCCTTGAGCAGCTAGAGGAGGTGTGCATTTCTGGGGCTTCTCAACTAAAATATGCTTTCGGTCAACATGAAGATGAGCATCAAGAGGTTCAGATCAAGACAATCAATTAA	2379	0.377	MDQVQKLEQQMKDSNSCCQGRCPTWRKYRLCRQMTKMIAATKNLNQRSEFNPFSTLVPIPDVEYFSSGNFVYFQSTKLASDQLLAALQDDDVRTIGLYGMGGCGKTTLVKEVGKEAKKSNLFDLVILTTVSQTLNIRKIQDEIADMSGLKFEEQSDEGRARRLSMRLSNGERILVILDDVWAMFDLKKVGIPLEDYRGCKILLTTRRLPVCNMMNCDRKIPLELLSNEESWTLFQKHARTIDESLSSVAQGIVRECKGLPIAIQAVGASLKGKSVAEWKEALKRLTNSKPMDVEEGVRDAFSCLRLSYDYLRNNEAKSLFLKCCMYPEDTYISIENLFRIMMGLGMCEELDSLEEARNKVDACVNILVNSCLLMHYEEYGGRLRMHDVVRDVALWISRQENRNIVVNLEKDMKMATNGSIKDCYAFTFWCNEKSQFPPRLDAPKLEILLLNDVGDECELSKANFGGMGLLRVLQIDCLYDGIVRSHLLSLPHSMNLLTNLRTLRLRFHQLGDDLSWVLGLKRLEVLDLKYSRFEDLPQGLEALSKLKLLDLHYIGEQSFKIIKRCTQLQELYVQKIRTTLRPGKCLLKDAGFPRLKRYKLQIINKYSDGTSSGDHQHLMHFHSKALSLEELKISALSPFIKDLLQQAEFVCLYRCDVGPPLLCFFEELQELHISHCPKLTSLFPQCVVRAMLLLQKLNINGCSELKNIIEEDGDSTNNEIISASNNSVYLVFSKLKSLTIIDCDKLEYIFSNSCVRGLEQLEEVCISGASQLKYAFGQHEDEHQEVQIKTIN	792

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4449g00010	792	Gene3D	-	67	220	IPR027417	-
	Pral4449g00010	792	PRINTS	Disease resistance protein signature	256	270	-	-
	Pral4449g00010	792	PRINTS	Disease resistance protein signature	167	181	-	-
	Pral4449g00010	792	PRINTS	Disease resistance protein signature	518	534	-	-
	Pral4449g00010	792	PRINTS	Disease resistance protein signature	94	109	-	-
	Pral4449g00010	792	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	3	775	-	-
	Pral4449g00010	792	Gene3D	Ribonuclease Inhibitor	416	601	IPR032675	-
	Pral4449g00010	792	Gene3D	-	224	307	IPR042197	-
	Pral4449g00010	792	CDD	AAA	81	205	-	-
	Pral4449g00010	792	Pfam	NB-ARC domain	81	308	IPR002182	GO:0043531
	Pral4449g00010	792	SMART	AAA_5	91	226	IPR003593	GO:0016887
	Pral4449g00010	792	FunFam	Probable disease resistance protein At1g61300	65	219	-	-
	Pral4449g00010	792	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	79	323	IPR027417	-
	Pral4449g00010	792	Gene3D	Ribonuclease Inhibitor	619	780	IPR032675	-
	Pral4449g00010	792	SUPERFAMILY	L domain-like	384	765	-	-
	Pral4449g00010	792	Gene3D	-	308	394	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4449g00010	Pral-Chr4449	136248	138937	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4449g00010	91	402	WRKY Transcription Factor Family	AT5G45050	25.767	2.49e-11	65.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4449g00010	-		-	pcin:129322196	847.81