Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4449g00004 ATGAGGAAAAGGGAGAGGGAAAATCCTTGTGGGGTATGCGGCCACTATCATAAATACGAAGAAGGGGAAGTTTGTTCGATTTGCGGCCACCGCATTCCGGCTGCATCGGAGAAAACTTCAATCCGAGTCAGCGCCTTCCCCTCCGTGATTTTGCCAGAATTCCTTTACTTGGGCAGTTATGATAACGCATCACGTTCGGAGCTTCTCAAGACTCAGGGAATCTCTCGAATCCTCAATACGGTTCCTTCTTGTCAAAATCTCTACAGAAACTCATTTACCTACCACTGTCTCCCAGATGACAAAACTTTGCCTTTTGATGAAGCGATTCAGTTTCTAGAGCAATGTGAGAAGGACAAGGCCCGCGTTTTGGTTCATTGCATGTCAGGGAAGAATAGGTCCCCAGCTATTGTGATTGCTTACCTGATGAAGTCCAGGGGATGGAGACTCAGCCAGAGCTACCAGTGGGTAAAAGAGAGGAGACCTTCTGTGGAATTATCTGAAGGTGTTTCCCAGCAACTGCAAGAGTATGAGCGCAAGATCTATGGAGCGGTTGACCCTGGCGGCTCTCCTTTGTTTGGATTCTCAACTCCAGCACCTCCTCCTATTAGCTTTGGCTACCCAAGAGTTAATGATCCAGCAGCTCCTCTTCCTGCCTTTAGCAATCCTGGCGCTACCTCAGTCTTTGCCCAAGCTCCCTTAGACGTGCCCCCGACTGACTTTACTTTTGGAGCCGGTCAGACTCAAAACAGTGTAATTGGGAGCCCATTCAACGCCAATCCACCAAATCGAACTGGCAGTGATGCCCAGATGGATGGTTCTTGA 822 0.4891 MRKRERENPCGVCGHYHKYEEGEVCSICGHRIPAASEKTSIRVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYRNSFTYHCLPDDKTLPFDEAIQFLEQCEKDKARVLVHCMSGKNRSPAIVIAYLMKSRGWRLSQSYQWVKERRPSVELSEGVSQQLQEYERKIYGAVDPGGSPLFGFSTPAPPPISFGYPRVNDPAAPLPAFSNPGATSVFAQAPLDVPPTDFTFGAGQTQNSVIGSPFNANPPNRTGSDAQMDGS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4449g00004 273 Pfam Dual specificity phosphatase, catalytic domain 55 178 IPR000340 GO:0008138|GO:0016311
Pral4449g00004 273 SMART dsp_5 46 179 IPR020422 GO:0006470|GO:0008138
Pral4449g00004 273 SMART ptp_7 83 185 IPR003595 -
Pral4449g00004 273 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 273 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Pral4449g00004 273 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 163 IPR000387 GO:0016311|GO:0016791
Pral4449g00004 273 CDD DSP_plant_IBR5-like 47 176 - -
Pral4449g00004 273 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Pral4449g00004 273 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Pral4449g00004 273 MobiDBLite consensus disorder prediction 244 273 - -
Pral4449g00004 273 Gene3D Protein tyrosine phosphatase superfamily 31 183 IPR029021 -
Pral4449g00004 273 FunFam Protein-tyrosine-phosphatase IBR5 36 185 - -
Pral4449g00004 273 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4449g00004 Pral-Chr4449 31562 38805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4449g00004 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.740 1.83e-98 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4449g00004 K04459 - gmx:100806021 464.922