Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4448g00061 ATGAAAGTGGAAGAACTCCAATTCGAATTCAATCGTCTCCACCACCATCACCAGCACCTCCAGCGGCAGAGTAAAGAGAAGACCCATTTGGGTCTCGCCGAACTCTCATCGGCCGTCGTCCCTGCCGATGATGGTGGTGGGTTTGAGAAGGTCATTGACGGCGAAGACGAGGATTGTTTCGTCCAGCCGATCAATTTCGCCATGGTAGATAACGGCATTTTCCGGTCCGGCTTCCCTCAACCCGACAACTTCTCCTTCCTCAAATCCCTCGGTCTCCGCTCCATTGTATATCTCTGTCCCGAGCCGTATGCGGAGGAAAGCTTAGAGTTCTTGAAGTCAAATGGGATCAAGCTTTATCAATTTGGGATTGACGGTCACAAGGAGCCTTTTGTAAGCATCCCGGAGGACACAATCTGTCAGGCCCTAAGAGTTGTCCTTGATGAGAAGAACCACCCAGTTTTAATTCACTGTAAACGAGGAAAGCACCGAACGGGTTGTGTGGTAGGCTGCTTCAGAAAGTTACAAAAATGGTGCTTGTCGTCAGTGTTTGATGAGTACCTACGCTTTGCAGCAGCCAAGGCAAGAGTTTCAGATCTGAGATTCGTGGAATCGTTCGATACTTCCAGCTTGTCGGCACATTTGCCCATGTCTTTCTCTTTTTCACAGAGGTGA 672 0.4926 MKVEELQFEFNRLHHHHQHLQRQSKEKTHLGLAELSSAVVPADDGGGFEKVIDGEDEDCFVQPINFAMVDNGIFRSGFPQPDNFSFLKSLGLRSIVYLCPEPYAEESLEFLKSNGIKLYQFGIDGHKEPFVSIPEDTICQALRVVLDEKNHPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYLRFAAAKARVSDLRFVESFDTSSLSAHLPMSFSFSQR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4448g00061 223 CDD PFA-DSP_Siw14 60 206 - -
Pral4448g00061 223 ProSitePatterns Tyrosine specific protein phosphatases active site. 155 165 IPR016130 GO:0016311|GO:0016791
Pral4448g00061 223 FunFam probable tyrosine-protein phosphatase At1g05000 59 209 - -
Pral4448g00061 223 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Pral4448g00061 223 ProSiteProfiles Dual specificity protein phosphatase domain profile. 65 218 IPR020422 GO:0006470|GO:0008138
Pral4448g00061 223 Pfam Tyrosine phosphatase family 61 211 IPR004861 -
Pral4448g00061 223 PANTHER TYROSINE-PROTEIN PHOSPHATASE 44 211 - -
Pral4448g00061 223 PRINTS Plant and fungal dual specificity phosphatase signature 60 77 IPR020428 GO:0016791
Pral4448g00061 223 PRINTS Plant and fungal dual specificity phosphatase signature 97 110 IPR020428 GO:0016791
Pral4448g00061 223 PRINTS Plant and fungal dual specificity phosphatase signature 133 147 IPR020428 GO:0016791
Pral4448g00061 223 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791
Pral4448g00061 223 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 61 205 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4448g00061 Pral-Chr4448 780291 784731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4448g00061 58 223 Protein tyrosine phosphatase (PTP) family AT4G03960 68.675 8.91e-83 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4448g00061 K18045 - gmx:100814279 284.263