Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4448g00028 ATGGCAATTGACCAAGAAGCATCTTCCTCAAATTCCTCCAACTCCAATTCAGCCCTAAGAACATGCAAGTATGACATTTTCTTGAGTTTTAGGGGCGAAGATACTCGTAAAGGCTTCACAGACCACTTGTATCATGCGTTAAAAAGGAGTGGATTAAGAGTTTTCAGAGATGATAATGAACTTGAAAGAGGAGAAGTCATCTCTGAACAACTCAAACAAGCAATTGAGGACTCTCATTTTGCAATTGTTATTCTCTCCAAAAATTATGCCTCTTCTTCATGGTGTTTAACTGAGCTCCAACATATTCTTTACTCAAGAGACAATGTGGGTCAACAAGTTTTTCCCATATTTTATGATGTAGATCCATCTCATGTACGGCATCAAAGCCAAAGTTTTGCTGAAGCTTTTGATAAGCATCAAAAGCGTGGAAAGGACAATAAAATCATGGAAAGTTGGAGAGATTCTCTCACAAAAGTTGCTAACTTATCTGGTTGGGATTGCGAGGATCGGGCTGAAGCAGAACTTATTGACACGGTCGTTGAAGAGCTGTGGACCAAATTACGTCATAGACTACCACCTTATAGTGAAGGACTGATTGGAATTGATAATAAAGTAGACCAAGTGGAGCCACTACTTGAGATGGGTTTGAATGATGTTCGGATTGTGGGATTATGGGGCTTACCGGGTGTTGGGAAGACAACAATTGCTTGGGCTATTTTTGAGAAATATCGTAATCAATTTGAAATTAGTTGCTTTGTTCACAATGTTAGGACAGTTTCAGAAAGAGATGGTGGTGAGGTTCAATTACAAAGTCAACTTCTTTCACATCTCAAAGTAAGAAACATGGAAATTGAAAACACCTACGAAGGGAAGAAAATAATCCAAAACCGTTGTTGCAATAAAAAAGTTTTACTTATCCTTGATGATGTTAGCCATACTACCCATCTAGAAAATTTGGCTAGTAGCCCAAATTGGTTTGGTGCTGGGAGTAGAGTGATCATAACAACTAGACATTTAGACTTGTTGTGTAGAGAGCATATAGTATATGTACATGAGGTTCAAACTATGAACCCACATGAATCCCTTCAACTCTTTTGTCAGAAAGCATTTGTAGGAGGTAAGCCTTCCGAGGGTCTTTTGGAGTTGTCTAAAGCTGTTTGTGATTATGCAAATGGCCTTCCTTTAGCTCTTTCTGTTTTGGGTTCTTTCTTTTGTGGAAGAAGTAGCGTGCTCGAATGGGAAGATGCTTTAGATATGATGAAAAAAGTTCCACATAAAGATATTTTTAGGAAACTGGAAATAAGCTTTGATGCGTTAACTGATACAGAACAAACAATATTTTTAGATATTGCTTGCTTCTTCAATTGCCAGAGCAAAAACAAAATAACACGAATATTAGAAAGTTGTGGTTTTAATGCAAAAATTGGCATAACAACTCTTCAGGAAAAGTCTATGCTAAAGGAATATAACAATGTTTTGGTGATGCATGACTTGCTGGAACAGATGGGCAGGAAAATTGTTTTAGGTAAATCTTCTAATGATGTTGGCAATCGTAGTAGATTGTGGACTAAGGAAGACATTGATGAAGTTATGGAAAACAACTTGGGCACAAAAGAAATACAAGCTATGGTTTCATTCACATCTTGTGAGGCATTTTGGAATCCTAAAGCATTTTCAACATTACGTAACCTCAGATTACTCATGGTATCAAGTGATTTCAACCTTCCTCACGGCCTCAAATATCTTTCTCATACTTTGAAGGTAGTTCACTGGGAAAAATACCCTTTAGACACTCTTCCTTTTGGAAACTGGTTGTCTAAACTTGTTGATCTTAGAATGCGTCATAGCAAATTAAAGAAACTTTGGAATAAAAGCCTGTGCTTGAAGAATCTGAAGTTTTTGGACTTGAGTTTTTCCAAAAACTTGATTGAAACTCCTGATTTCTCTAAACTCCCAAATCTGGAAAAACTAGCACTTGAAGGTTGTGAAAAACTTATTGACCTTCATGCTTCAATTGGACAACACAAAAAGCTTCAGGTATTGAACTTGAAAGGTTGCAAAAGTCTTACAGCCCATTGTCTCAAAAAACTGGAAATGACTCCGCTGAAAGAATTTGTTCTTTGTGGGTGCACTCGAGTAAAATTTCTCCCAAAGTTTGGGGAAAGTATGAAAAATCTAGAAACACTTGATGCTGGGGAGACAAATTTAGTCAAACTTCCCAAGTCACTTGGCTTGTTGACTGGTCTCAAAACTTTGAAATTAAGGGGTTGCAAAAATCTTGTTTGCCTTCCTCGAAGCATTCACAATTTGAAATGTCTTGTACTTCTTGATATTGCTGGGTGCTCAAAATTTGCTAGATTGCCAGAGAAGTTAAATGAAATTGAAGCCTTGGAGGAGCTGGACGCAAGTGAAACTGATATAACAGAAATACCTTGTTCCGTTGGTGGTTTAGAAAAACTCAAGAAATTGTCATTCCATGGGTGCGAAAGGTCAACGTTGAACTCTTGGAGCATGATTCTTCCTTGGAGGCATTCAATTCATAAGGGCTTAACATTGCCTATTTCAATGTTCAATCTTAAATCACTAAAAAAATTGGATTTAAGCTACTGCGGTATTGATGATGGATCCATTCCAGATGACTTCGGTGGCTTATCATCGTTGTGGTGGTTAGATCTAAGTGGAAACAAGTTTAAGAATCTACCTGCTGGCTGCATATCAAATCTTTTGAATTTGGGAATTCTAGTGATGAATTCTTGCATGGAACTTCAGTCGTTGCCACAGATTCCGCCCAGAGTAACGAGTATGTGTGCAGAAAAATGTGATTCATTGGATACAGTGGAAGGTGAACAATTATCACATCTCTTTGCTTCAAGGGACCAGGAATTTTCACTTACTAATTTCGAGATGAATATTGCTGCAAGTGAAATATCGCCATGGTTTGAGAATCAAGTCGATCTTTATCGGGATCACAAAGGCGACGCTTTAGTGATGATAGACATACCCCCTTGCGAAGAAATATTGGGAATTGGATTATGCACTCTTCTAGAAAGTAACTTTTATTTCAGAGAAGGGAGGTTGCTTTTGTGGCGGTTGCGCGGTTGTGGGTTTATTATGGGTCCCCGTCACAGAAACCATGCTATGCCAGCGTCCAATTGTAAGGGTGGGAAGAAAAGAAAGTCTTGTCACCTCTGGGTCTTATTTTACTATCCAACAAAGTATTACCGTGATATGTGGCAATCAAGGAAGTACAGTCAGATTCCCTTCGTATTTACAGCCCGTCCCGACAATGCGGAAGTTTTAATAAAGTGTGGATGGCATGTCATTCGCAAAGTTGATGTTGAAAACAGTGGCAGCTCAAAGAGTCAAAGTCTCCTTCCAATATTGGAACAACAAACGGACCGAGTTGTTGATCATAACCCGGTGCTGATGACAGGCCTTGGGAGCCCATGGCATTTCCAAACCGCATTCACGAAAGATGGTCCAATAACGCTCCCAGACCCACGTTTAGATCCAAACCTCGGTATTCCACACAAATTCCTCTAA 3543 0.3889 MAIDQEASSSNSSNSNSALRTCKYDIFLSFRGEDTRKGFTDHLYHALKRSGLRVFRDDNELERGEVISEQLKQAIEDSHFAIVILSKNYASSSWCLTELQHILYSRDNVGQQVFPIFYDVDPSHVRHQSQSFAEAFDKHQKRGKDNKIMESWRDSLTKVANLSGWDCEDRAEAELIDTVVEELWTKLRHRLPPYSEGLIGIDNKVDQVEPLLEMGLNDVRIVGLWGLPGVGKTTIAWAIFEKYRNQFEISCFVHNVRTVSERDGGEVQLQSQLLSHLKVRNMEIENTYEGKKIIQNRCCNKKVLLILDDVSHTTHLENLASSPNWFGAGSRVIITTRHLDLLCREHIVYVHEVQTMNPHESLQLFCQKAFVGGKPSEGLLELSKAVCDYANGLPLALSVLGSFFCGRSSVLEWEDALDMMKKVPHKDIFRKLEISFDALTDTEQTIFLDIACFFNCQSKNKITRILESCGFNAKIGITTLQEKSMLKEYNNVLVMHDLLEQMGRKIVLGKSSNDVGNRSRLWTKEDIDEVMENNLGTKEIQAMVSFTSCEAFWNPKAFSTLRNLRLLMVSSDFNLPHGLKYLSHTLKVVHWEKYPLDTLPFGNWLSKLVDLRMRHSKLKKLWNKSLCLKNLKFLDLSFSKNLIETPDFSKLPNLEKLALEGCEKLIDLHASIGQHKKLQVLNLKGCKSLTAHCLKKLEMTPLKEFVLCGCTRVKFLPKFGESMKNLETLDAGETNLVKLPKSLGLLTGLKTLKLRGCKNLVCLPRSIHNLKCLVLLDIAGCSKFARLPEKLNEIEALEELDASETDITEIPCSVGGLEKLKKLSFHGCERSTLNSWSMILPWRHSIHKGLTLPISMFNLKSLKKLDLSYCGIDDGSIPDDFGGLSSLWWLDLSGNKFKNLPAGCISNLLNLGILVMNSCMELQSLPQIPPRVTSMCAEKCDSLDTVEGEQLSHLFASRDQEFSLTNFEMNIAASEISPWFENQVDLYRDHKGDALVMIDIPPCEEILGIGLCTLLESNFYFREGRLLLWRLRGCGFIMGPRHRNHAMPASNCKGGKKRKSCHLWVLFYYPTKYYRDMWQSRKYSQIPFVFTARPDNAEVLIKCGWHVIRKVDVENSGSSKSQSLLPILEQQTDRVVDHNPVLMTGLGSPWHFQTAFTKDGPITLPDPRLDPNLGIPHKFL 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4448g00028 1180 SUPERFAMILY L domain-like 852 927 - -
Pral4448g00028 1180 SUPERFAMILY L domain-like 558 835 - -
Pral4448g00028 1180 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 189 - -
Pral4448g00028 1180 Pfam NB-ARC domain 204 425 IPR002182 GO:0043531
Pral4448g00028 1180 Gene3D - 355 440 IPR042197 -
Pral4448g00028 1180 SMART LRR_typ_2 605 628 IPR003591 -
Pral4448g00028 1180 SMART LRR_typ_2 651 675 IPR003591 -
Pral4448g00028 1180 SMART LRR_typ_2 884 907 IPR003591 -
Pral4448g00028 1180 SMART LRR_typ_2 723 746 IPR003591 -
Pral4448g00028 1180 SMART LRR_typ_2 859 883 IPR003591 -
Pral4448g00028 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 450 IPR027417 -
Pral4448g00028 1180 Gene3D - 188 350 IPR027417 -
Pral4448g00028 1180 SMART till_3 23 162 IPR000157 GO:0007165
Pral4448g00028 1180 Pfam Leucine Rich Repeat 607 622 IPR011713 -
Pral4448g00028 1180 Pfam TIR domain 23 190 IPR000157 GO:0007165
Pral4448g00028 1180 Gene3D Ribonuclease Inhibitor 697 840 IPR032675 -
Pral4448g00028 1180 Gene3D Ribonuclease Inhibitor 543 696 IPR032675 -
Pral4448g00028 1180 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 717 IPR044974 GO:0006952
Pral4448g00028 1180 PRINTS Disease resistance protein signature 626 642 - -
Pral4448g00028 1180 PRINTS Disease resistance protein signature 390 404 - -
Pral4448g00028 1180 PRINTS Disease resistance protein signature 221 236 - -
Pral4448g00028 1180 PRINTS Disease resistance protein signature 297 311 - -
Pral4448g00028 1180 ProSiteProfiles TIR domain profile. 22 187 IPR000157 GO:0007165
Pral4448g00028 1180 Gene3D - 18 187 IPR035897 -
Pral4448g00028 1180 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 165 IPR035897 -
Pral4448g00028 1180 Gene3D Ribonuclease Inhibitor 843 952 IPR032675 -
Pral4448g00028 1180 SUPERFAMILY "Winged helix" DNA-binding domain 427 531 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4448g00028 Pral-Chr4448 175701 223258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4448g00028 24 832 WRKY Transcription Factor Family AT4G12020 31.288 7.09e-97 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4448g00028 - - pcin:129302825 1251.11