Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4448g00027 ATGGCAAGTCAGCAAGAAACATCTTTCTTAAAATCTTCCTACTCCAATTCAACACAAAGAACCTGGAAGTATCACATTTTCTTGAGTTTTAAGGGTGAAGACACTCGTAAAGGCTTTACAGATCATTTGTACCATGCTTTAGGTAGGAGTGGGTTCAAAGTCTTCAGAGATGATGAAGAACTTGAGAAAGGAGAAGTCATTTCAAAAGAACTACTCCAAGCAATTGAGGAATCTAATTTTGCAATTGTTGTTCTCTCCAAAAATTATGCCTCTTCTTCATGGTGTTTAAATGAGCTCCAGCATATTCTTTACTCAAGAGATAATCTTTGTCAACAAGTTTTCCCCATATTTTATGGTGTAGATCCATCTCATGTACGGCATCAAACAGGAACTTTTGCTGAAGCTTTTGCTAGGCATCAAATGCTTCAAAGGGACGATAAGGTCATGCGAAATTGGAGAGATTCCCTCACTAAAGTTGCTAACTTATCTGGTTGGGATTGCAAGGATAGGCCTGAAGCAGAAGTTATTGACACGGTAGTTAAGGAGCTGTGGACCAAATTACGTTCCAGACTGCCACCTTATGGTGATGAACTAATTGGAATTGACAGTAAAGTGCAGAAAATGGAGCCACTGTTGAAGATAGGTTTGAATGATGTTCGCTTTGTAGGAATATGGGGCTTACCGGGTGTGGGTAAGACAACAATTGCTAGGGCTGTTTTGGAGAAATATCGTGGCCAATTTGAAATTAGTTGCTTTCTTCATAATGTTAGGGAAACTTCAGAAAGAGATGGTGAGGTTCACTTACAAAGTAAACTTCTTTCTCATCTCAAAATTAGAAACATGGAAATTGAAGACACCTATGAAGGGAAGAAAATAATCCAAAACCTTTGTTGCAACAAAAAAGTTTTACTTATCCTTGATGATGTTAGCCATACAACCCACTTAGAAAATTTGGCTAATAGCCCGAATTGGTTTGGTGCTGGGAGCAGAGTGATCATAACAACTAAAAATCGGCACTTATTGCGTAGAGCGCATGCAGTGCATGAACATGAGGTTAAAACTATGAACCCACATGAATCCCTTGAACTTTTCTGTAAGAAAGCATTTGGAAGACGTGAACCTCAAGAGAATTTGCTGCAGTTGTCTAAATCTGTTTGTGATTATGCAGGAGGCCTTCCTTTAGCTCTCTCTGTTTTGGGTTCTTTCTTTTGTGGAAGAAGAAGTGTGCCAGAATGGGAAGATGCTTTGGATATGTTGAAGAAAGATCCACATAAAGATATTTTTATGCCACTTGAAATGAGTTTTAATGCGTTAACCTCTATAGAAAAGACAATACTTTTAGATATTGCTTGCTTCTTTAATGGCTGGAGCAAAAAGGTAATAACACAAATATTGGAAAGTTGTGGTTTTAATGCAAAAATTGGAATAACAACTCTTCATGAGAAGTCTATGCTAAACGATTATGACAATCATTTAGTGATACATGATTTGCTAGAACAAATGGGTAAGAAAATTATTATAGATAAATCTTCTAATGAGATCGGAAGTCGTAGTAGATTGTGGTCCAAGGAAGATATTGATGAAGTTATGGAAAACAATTTGGGCACAAAAGAAATACAAGCTATGGTTTCATCCACATCTTGTGAGGCATGTTGGGATTCTGAAGCCTTTTCAGCATTGGGTAACCTCAGGTTACTCATGGTATCAAATACTCTTCCTTTCGGAACTCATCTTGCCAAACTTGTTGATCTTAGAATGCGTGATAGCAAATTAAAGAAATTTTGGAATAAAAGCTTGTGCTCAAAGAATTTGAAGTTTTTGGACTTGAGTTATTCCAAAAACTTGATTGAAAGTCCTGATTTTTCTGAACTTCCAAACCTAGAAAGATTGGAACTTGAAGGTTGTGAAGATCTTGTTGACCTTCATACTTCAATTGCACAACTCAAAAAGCTCCAAGCGTTGAACTTAAAAGGTTGCAAAACTCTTAGAGCTTGTTGTCCAAAAAAATTGGAAATGACTGCTCTGAAAGAATTTGTTCTTTCTGGATGTCTTCAAGTAAAATTTCTCCCAGAGTTTGGAGAAAGTATGAAAAATCTAGAAACACTTGATGCTGGGGAGACAAATTTAGTCAAACTTCCTGAGTCACTTGGCTTATTGATTGGTCTTAAGACTTTGAAATTAAGGGGCTGTAAAAATCTTGTTTGCCTTCCTCAAAGCATTCACAATTTGAAACGTCTTGTAGTTATTGATATATCTGGCTGCTCAAAGTTTGCTAGATTGCCAGAAAGGTTGAATGAAATTGAAGGCTTAGAGGAGCTCGACGCAAGTGAAACCGATATAACAGAGATACCTCCTTCCATTGGTGGTTTAGAGAAACTCAAGAAATTGTCATTTCGTTGGTGCAAAAGGTCAATGTCATACTCTTGGAGCATGATTCTTCCTTGGAGGCATTCAGTTCATAACGGCTTAACATTGCCTTCTTCAATACTGAGTATTAAATCATTGATAGAATTGGATTTAAGCTACTGCAGGATTGATGATGCATCCGTTCCGGATGACTGGAGGGGCTTATCATCATTGGAGAGATTAGATCTGAGTGGAAACAATTTTAAGAGTCTACCTGCTGGCTGCATATCTAATCTTTTGAAATTGAAACGTCTGGATTTAAATTCTTGCTCAGAACTTCAGTCGTTGCCGCAGCCTCCGCCAAGTTTATGTTTCCTGGAAGCAGAAGAATGTGCTTCGTTGGAAACAGTGGGAGGTGAACAATTATCACATCTCTTTGCTTCAATGGACCAATGGGAGGTGAAAACAACGCCTTGGATGGATGAAACTCTTTCGGTGACTATTCCTGGACGTGAAATACCATCATGGTTTGAGAATCAAATTGATCTTTGTCCGGATGAAGATGGTAGAGCTTTATTGATTGTAGACATACCTTCTTGGGAAGAAATGTTGGGAATTGGATTATGCATTCTGTTAGAAAGTAAGTTTTATAATTCCACTGAACCCGACACCAGAGAATCAGCTTTCTTGTGGTGGATTGTTGATTTTGGTAAAAATCCCGAAAATCGCAAGAAGATAAGGGCATTTGATTGTGATGGTGAGAAGAAAAGAAAGTCTTGTCACCGTTGGCTCGCGTTTTGGAAATATACAAAGGAATTCTGTGCTATGGTGTACTCAAGGAAGCATAGTCAGATTCCCTTTTATCTTAATGCGGGCCGTAATAATGCGAAAGTTTCAATGAAGTGTGGATGGCGTGTCATACGCAAAAGTGATTTTGAAAACAGCGGTAGCTCAATAATGAGCCGAAGTCGCCTTCCAAAATGGGACCACCTGTACCAAGATCTTCGTATGCCTGGCCCCCCATGTATGCATACAGCATTTTACAGGTCCACTGCATTCACGAGGTATGGTTCCATAATGCTCCCTGGCCAAGGTTCAGGTTCAAGGCTCGAGAAATTACAGAAGAGACCAATCCAGCAAAATGACGATGAAGGATTAGACGAGATAGAACGCTACGTTTTGCTGAGGTTCCCATATTCGATTCGAGGTTGCACATGTTCAGATTCTCCTAACTCTCATCTATGTTTTGTTTGCCCATTTCTCTCGATCCTCCACCTCCGGTTGTCATCTTCTCCATATCCACCATCTCCATCTTCATCGACCACCGTCTCGGTCCTCTCAATTCCACCATCGATCTCCTCTCGTCCTTCAGTTGCAATTCCGTCGTCACTTGCTGAGAGCCATGATCGAGAGCCCTGTGAACCTCGGTGA 3777 0.3942 MASQQETSFLKSSYSNSTQRTWKYHIFLSFKGEDTRKGFTDHLYHALGRSGFKVFRDDEELEKGEVISKELLQAIEESNFAIVVLSKNYASSSWCLNELQHILYSRDNLCQQVFPIFYGVDPSHVRHQTGTFAEAFARHQMLQRDDKVMRNWRDSLTKVANLSGWDCKDRPEAEVIDTVVKELWTKLRSRLPPYGDELIGIDSKVQKMEPLLKIGLNDVRFVGIWGLPGVGKTTIARAVLEKYRGQFEISCFLHNVRETSERDGEVHLQSKLLSHLKIRNMEIEDTYEGKKIIQNLCCNKKVLLILDDVSHTTHLENLANSPNWFGAGSRVIITTKNRHLLRRAHAVHEHEVKTMNPHESLELFCKKAFGRREPQENLLQLSKSVCDYAGGLPLALSVLGSFFCGRRSVPEWEDALDMLKKDPHKDIFMPLEMSFNALTSIEKTILLDIACFFNGWSKKVITQILESCGFNAKIGITTLHEKSMLNDYDNHLVIHDLLEQMGKKIIIDKSSNEIGSRSRLWSKEDIDEVMENNLGTKEIQAMVSSTSCEACWDSEAFSALGNLRLLMVSNTLPFGTHLAKLVDLRMRDSKLKKFWNKSLCSKNLKFLDLSYSKNLIESPDFSELPNLERLELEGCEDLVDLHTSIAQLKKLQALNLKGCKTLRACCPKKLEMTALKEFVLSGCLQVKFLPEFGESMKNLETLDAGETNLVKLPESLGLLIGLKTLKLRGCKNLVCLPQSIHNLKRLVVIDISGCSKFARLPERLNEIEGLEELDASETDITEIPPSIGGLEKLKKLSFRWCKRSMSYSWSMILPWRHSVHNGLTLPSSILSIKSLIELDLSYCRIDDASVPDDWRGLSSLERLDLSGNNFKSLPAGCISNLLKLKRLDLNSCSELQSLPQPPPSLCFLEAEECASLETVGGEQLSHLFASMDQWEVKTTPWMDETLSVTIPGREIPSWFENQIDLCPDEDGRALLIVDIPSWEEMLGIGLCILLESKFYNSTEPDTRESAFLWWIVDFGKNPENRKKIRAFDCDGEKKRKSCHRWLAFWKYTKEFCAMVYSRKHSQIPFYLNAGRNNAKVSMKCGWRVIRKSDFENSGSSIMSRSRLPKWDHLYQDLRMPGPPCMHTAFYRSTAFTRYGSIMLPGQGSGSRLEKLQKRPIQQNDDEGLDEIERYVLLRFPYSIRGCTCSDSPNSHLCFVCPFLSILHLRLSSSPYPPSPSSSTTVSVLSIPPSISSRPSVAIPSSLAESHDREPCEPR 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4448g00027 1258 Gene3D - 17 186 IPR035897 -
Pral4448g00027 1258 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 189 - -
Pral4448g00027 1258 SUPERFAMILY L domain-like 550 917 - -
Pral4448g00027 1258 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 165 IPR035897 -
Pral4448g00027 1258 SUPERFAMILY "Winged helix" DNA-binding domain 427 530 IPR036390 -
Pral4448g00027 1258 Gene3D Ribonuclease Inhibitor 669 801 IPR032675 -
Pral4448g00027 1258 Gene3D - 187 350 IPR027417 -
Pral4448g00027 1258 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Pral4448g00027 1258 Gene3D Ribonuclease Inhibitor 528 668 IPR032675 -
Pral4448g00027 1258 PRINTS Disease resistance protein signature 879 895 - -
Pral4448g00027 1258 PRINTS Disease resistance protein signature 389 403 - -
Pral4448g00027 1258 PRINTS Disease resistance protein signature 221 236 - -
Pral4448g00027 1258 PRINTS Disease resistance protein signature 296 310 - -
Pral4448g00027 1258 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 687 IPR044974 GO:0006952
Pral4448g00027 1258 Gene3D - 354 439 IPR042197 -
Pral4448g00027 1258 SMART till_3 23 162 IPR000157 GO:0007165
Pral4448g00027 1258 Pfam NB-ARC domain 217 433 IPR002182 GO:0043531
Pral4448g00027 1258 Pfam TIR domain 23 190 IPR000157 GO:0007165
Pral4448g00027 1258 MobiDBLite consensus disorder prediction 1217 1258 - -
Pral4448g00027 1258 Pfam Leucine rich repeat 835 892 IPR001611 GO:0005515
Pral4448g00027 1258 SMART LRR_typ_2 857 880 IPR003591 -
Pral4448g00027 1258 SMART LRR_typ_2 767 790 IPR003591 -
Pral4448g00027 1258 SMART LRR_typ_2 696 719 IPR003591 -
Pral4448g00027 1258 MobiDBLite consensus disorder prediction 1217 1243 - -
Pral4448g00027 1258 Gene3D Ribonuclease Inhibitor 817 951 IPR032675 -
Pral4448g00027 1258 SMART AAA_5 218 356 IPR003593 GO:0016887
Pral4448g00027 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 449 IPR027417 -
Pral4448g00027 1258 ProSiteProfiles Leucine-rich repeat profile. 859 880 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4448g00027 Pral-Chr4448 122407 129212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4448g00027 24 804 WRKY Transcription Factor Family AT4G12020 29.639 5.54e-81 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4448g00027 - - pcin:129302825 1237.25