Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4448g00019 | ATGCAATCCGACAATGGTAAGTTATTTATTGGTGGGATATCATGGGACACAAATGAAGAGCGGCTTAGAGATTATTTCAGTTCTTATGGGGAGGTCGTGGAAGCAGTAATTATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTTGGTTTTGTAGTTTTTGCAGACCCAACTGTTGCTGAGAGAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCCAAGAAGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAGCAACCATGGTTCTCCTGGTCCAGGCCGCACGAAAAAGATATTTGTTGGTGGTTTAGCGTCCACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACAATAACAGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGACTCTGAAGAAGCTGTTGAGAAGGTCTTATTTAAGACCTTCCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGAACTATCACCTGCACCAAGCCGAAGCCCACTCGCTGGATATAACTATGGTATGAATAGGGTCAATAATTTCCTAACTGGCTTCACGCAGGGATATGCTCCAGGTGCTGTTGGAGGCTTTGGACTCAGGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGTCGAAGTGGGTTTTCACCATTTGGATCTGGTTATGGAATGAATATGAATTTTGAGCCCGGTTTGAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAACAGTCTTAGTTACGGTCGGGCAATAAATCCATATTATATTGGAAGCTCAAATAGGTTTGGGAGTCCTATTGGATATGATGGTAATAATGGAGGAAACAACTCTTTCTTCAGCTCTGTAACTCGGAACTTGTGGAGAACTGATAGTCTTAATTACGGAACAAGTTCTGCTAACTCCAGTGCATACACAGGATCAGGAAGTGGGAATGTTGGAGGAAGTATTTATGGCAATGCTGGAGTCAGTTGGGGTTCTTCATCAATTTCTGCCCAAGGTACAATGAACAATGTGTCACAGATTAGTGGTGCTAACCTCAGCTTTGGGGTAGATGACAATGGTTATGGTCTGGGAACCGGAGGTTATGGAAGAAACAGTGGTACAAATATTGCTCCGACATCATCACACTCTGCATCAAATGGTGCTTTTGACGGAGCTTTTGCTGATTTATACAATAGTAGTTCAGTTTATGGGGATGCCACTTGGCGGTCTTCAAATTCTGAGCTAGATGAATCTGGTCCCTTTGGTTTTGGGCTTGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG | 1443 | 0.4331 | MQSDNGKLFIGGISWDTNEERLRDYFSSYGEVVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHNIDGRMVEAKKAVPRDDQSILSRNSGSSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLFKTFHELNGKMVEVKRAVPKELSPAPSRSPLAGYNYGMNRVNNFLTGFTQGYAPGAVGGFGLRVDGRFSPVASGRSGFSPFGSGYGMNMNFEPGLSPGFGGNANFNNSLSYGRAINPYYIGSSNRFGSPIGYDGNNGGNNSFFSSVTRNLWRTDSLNYGTSSANSSAYTGSGSGNVGGSIYGNAGVSWGSSSISAQGTMNNVSQISGANLSFGVDDNGYGLGTGGYGRNSGTNIAPTSSHSASNGAFDGAFADLYNSSSVYGDATWRSSNSELDESGPFGFGLGAAASDVSAKSSPGYVGGYTVNKRQPNRGIAT | 480 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4448g00019 | 480 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Pral4448g00019 | 480 | CDD | RRM2_Hrp1p | 108 | 185 | - | - | |
Pral4448g00019 | 480 | MobiDBLite | consensus disorder prediction | 86 | 102 | - | - | |
Pral4448g00019 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Pral4448g00019 | 480 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 104 | 191 | - | - | |
Pral4448g00019 | 480 | Gene3D | - | 104 | 191 | IPR012677 | - | |
Pral4448g00019 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 105 | 204 | IPR035979 | GO:0003676 | |
Pral4448g00019 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 109 | 165 | IPR000504 | GO:0003723 | |
Pral4448g00019 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 69 | IPR000504 | GO:0003723 | |
Pral4448g00019 | 480 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Pral4448g00019 | 480 | SMART | rrm1_1 | 108 | 180 | IPR000504 | GO:0003723 | |
Pral4448g00019 | 480 | MobiDBLite | consensus disorder prediction | 81 | 106 | - | - | |
Pral4448g00019 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 107 | 184 | IPR000504 | GO:0003723 | |
Pral4448g00019 | 480 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 1 | 476 | - | - | |
Pral4448g00019 | 480 | MobiDBLite | consensus disorder prediction | 454 | 480 | - | - | |
Pral4448g00019 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 105 | IPR035979 | GO:0003676 | |
Pral4448g00019 | 480 | Gene3D | - | 4 | 88 | IPR012677 | - | |
Pral4448g00019 | 480 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4448g00019 | Pral-Chr4448 | 56257 | 62055 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4448g00019 | 8 | 186 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 29.787 | 1.75e-15 | 77.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4448g00019 | K14411 | - | gmx:100795907 | 782.326 |