Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4448g00017 ATGCAATCCGACAATGGTAAGTTATTTATTGGTGGGATATCATGGGACACAAATGAAGAGCGGCTTAGAGATTATTTCAGTTCTTATGGGGAGGTCGTGGAAGCAGTAATTATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTTGGTTTTGTAGTTTTTGCAGACCCAACTGTTGCTGAGAGAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCCAAGAAGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAGCAACCATGGTTCTCCTGGTCCAGGCCGCACGAAAAAGATATTTGTTGGTGGTTTAGCGTCCACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACAATAACAGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGACTCTGAAGAAGCTGTTGAGAAGGTCTTATTTAAGACCTTCCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGAACTATCACCTGCACCAAGCCGAAGCCCACTCGCTGGATATAACTATGGTATGAATAGGGTCAATAATTTCCTAACTGGCTTCACGCAGGGATATGCTCCAGGTGCTGTTGGAGGCTTTGGACTCAGGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGTCGAAGTGGGTTTTCACCATTTGGATCTGGTTATGGAATGAATATGAATTTTGAGCCCGGTTTGAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAACAGTCTTAGTTACGGTCGGGCAATAAATCCATATTATATTGGAAGCTCAAATAGGTTTGGGAGTCCTATTGGATATGATGGTAATAATGGAGGAAACAACTCTTTCTTCAGCTCTGTAACTCGGAACTTGTGGAGAACTGATAGTCTTAATTACGGAACAAGTTCTGCTAACTCCAGTGCATACACAGGATCAGGAAGTGGGAATGTTGGAGGAAGTATTTATGGCAATGCTGGAGTCAGTTGGGGTTCTTCATCAATTTCTGCCCAAGGTACAATGAACAATGTGTCACAGATTAGTGGTGCTAACCTCAGCTTTGGGGTAGATGACAATGGTTATGGTCTGGGAACCGGAGGTTATGGAAGAAACAGTGGTACAAATATTGCTCCGACATCATCACACTCTGCATCAAATGGTGCTTTTGACGGAGCTTTTGCTGATTTATACAATAGTAGTTCAGTTTATGGGGATGCCACTTGGCGGTCTTCAAATTCTGAGCTAGATGAATCTGGTCCCTTTGGTTTTGGGCTTGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGTCCATGAGGGAATTGAGAGAAATATGAGTCTTAATATTGGGTGCATGGATACAGGAATTGCTACATAG 1497 0.4315 MQSDNGKLFIGGISWDTNEERLRDYFSSYGEVVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHNIDGRMVEAKKAVPRDDQSILSRNSGSSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLFKTFHELNGKMVEVKRAVPKELSPAPSRSPLAGYNYGMNRVNNFLTGFTQGYAPGAVGGFGLRVDGRFSPVASGRSGFSPFGSGYGMNMNFEPGLSPGFGGNANFNNSLSYGRAINPYYIGSSNRFGSPIGYDGNNGGNNSFFSSVTRNLWRTDSLNYGTSSANSSAYTGSGSGNVGGSIYGNAGVSWGSSSISAQGTMNNVSQISGANLSFGVDDNGYGLGTGGYGRNSGTNIAPTSSHSASNGAFDGAFADLYNSSSVYGDATWRSSNSELDESGPFGFGLGAAASDVSAKSSPGYVGGYTVNKRQPNRVHEGIERNMSLNIGCMDTGIAT 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4448g00017 498 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pral4448g00017 498 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Pral4448g00017 498 CDD RRM2_Hrp1p 108 185 - -
Pral4448g00017 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 165 IPR000504 GO:0003723
Pral4448g00017 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Pral4448g00017 498 MobiDBLite consensus disorder prediction 86 102 - -
Pral4448g00017 498 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pral4448g00017 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pral4448g00017 498 Gene3D - 4 88 IPR012677 -
Pral4448g00017 498 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Pral4448g00017 498 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pral4448g00017 498 SMART rrm1_1 108 180 IPR000504 GO:0003723
Pral4448g00017 498 MobiDBLite consensus disorder prediction 81 106 - -
Pral4448g00017 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Pral4448g00017 498 Gene3D - 104 191 IPR012677 -
Pral4448g00017 498 SUPERFAMILY RNA-binding domain, RBD 105 204 IPR035979 GO:0003676
Pral4448g00017 498 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4448g00017 Pral-Chr4448 56256 62055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4448g00017 8 186 Eukaryotic Initiation Factors Gene Family AT2G36660 29.787 2.56e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4448g00017 K14411 - gmx:100795907 775.007