Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4445g00004 ATGTCTGCTGTAACAAAGAGAGGTAATAAGATGAGTAGTAAAGAAGAAGAGAACAGTACTGAGATGAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGCCTCCTCATTCACTATATTGCTCGCCATGGTGAAGGTCGCTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGAATGGGAAAAGTTGCAGACTCAGATGGCTTAATTACTTGAAACCAGACATCAAACGAGGAAACCTTACCCCACAAGAGCAGCTCTTGATCCTAGAACTCCATTCTAGGTGGGGTAACAGGTGGTCGAAAATTGCTCAGCATCTGCCAGGAAGAACTGACAATGAGATCAAGAACTATTGGAGAACCAGGGTGCAGAAACAAGCACGCCAACTAAACATTGAATCTGGAAGCAAGAAATTCATAGATGCGATTCGGTGTTTCTGGACGCCAAGATTACTTCAAAAGGTTGAACAGCAACAGAACTCTTCTTCTGCAGCCACCTCGTACTCTTCTCTCACAGACACCAATAATCTTCATGTTTCTTCTTCATCATCTTCTCCAATGTTGTCAACCAACTACAATAACAACTCTGTTATACCTAATTCTCTGTCCTGTTCCCCATCATCATCATCTTTCCAGCAGCCCGCTGCAAATTTTTCCAGCACTTTCTGCTCCAATCCCAGCAATTTTCCCTCTGATTCTTGGAAATTCTCGCAGTTTCTGGAACCTTCTCCTTTAGAACTCCCAGCAAGCCATTGTTATATGTTGGAGAACAATGCTTGTTACGGCAACCCAATTCAGGAAAACTTGTTGGTGAACAATATGACTACTACTACTGCTGGTGGTTGTGGAATGAATAACTGGAACCTGCAGGAACCGGCGACAATGATGGAAACTTGCGACATGTTGCCGTTTAATTATTATCAGCCAACAGGAGAAAGTGACTGGACGTTAGGAAACATGGCAGACACTTTATGGAACATGGAAGCTCTGTAA 990 0.4333 MSAVTKRGNKMSSKEEENSTEMRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKKFIDAIRCFWTPRLLQKVEQQQNSSSAATSYSSLTDTNNLHVSSSSSSPMLSTNYNNNSVIPNSLSCSPSSSSFQQPAANFSSTFCSNPSNFPSDSWKFSQFLEPSPLELPASHCYMLENNACYGNPIQENLLVNNMTTTTAGGCGMNNWNLQEPATMMETCDMLPFNYYQPTGESDWTLGNMADTLWNMEAL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4445g00004 329 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 39 48 IPR001345 GO:0003824
Pral4445g00004 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 71 IPR017930 -
Pral4445g00004 329 SMART sant 76 124 IPR001005 -
Pral4445g00004 329 SMART sant 23 73 IPR001005 -
Pral4445g00004 329 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral4445g00004 329 CDD SANT 81 120 IPR001005 -
Pral4445g00004 329 FunFam MYB transcription factor 81 144 - -
Pral4445g00004 329 MobiDBLite consensus disorder prediction 1 24 - -
Pral4445g00004 329 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Pral4445g00004 329 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Pral4445g00004 329 FunFam Myb transcription factor 24 76 - -
Pral4445g00004 329 CDD SANT 26 71 IPR001005 -
Pral4445g00004 329 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Pral4445g00004 329 MobiDBLite consensus disorder prediction 9 24 - -
Pral4445g00004 329 Gene3D - 24 76 - -
Pral4445g00004 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Pral4445g00004 329 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Pral4445g00004 329 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Pral4445g00004 329 Gene3D - 80 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4445g00004 Pral-Chr4445 33846 35309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4445g00004 21 167 MYB Transcription Factor Family AT1G68320 79.592 1.48e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4445g00004 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4445g00004 K09422 - gmx:100780759 341.273