LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4443g00029	ATGAGTAGCAATGGCCAATCTTCCGTTAACAGCTATAACATCAGAGACTTAATCTGCAACGCCGGCGCTGGTGCCTCAGCTGGGGCAATAGCGGCCACATTTGTGTGCCCATTGGATGTCATCAAGACTAGACTACAAGTTCATGGTCTTCCCCCTGGGCAGACAGGCAGTGTTATCATCACAAGTTTGCAGAATATAGCCAGAACTGAAGGTTTCAGGGGGCTGTATCGTGGACTTTCACCAACAATACTAGCATTACTTCCAAACTGGGCGGTTTACTTCACAGTTTATGAGCAACTAAAAGGCCTGCTTCGTTCACGTGATGGTTGCCACCAACTCACAACTAGTGAAAATATGATAGCTGCTGCCGGTGCTGGAGCAGCCACAGCAATTTCAACAAACCCATTGTGGGTTGTTAAGACCAGACTTCAAACACAGGGAATGAGGCCAAATGTCGTTCCTTACAAGAGTGTTCTTTCTGCTCTGACAAGGATTACTCGTGAGGAAGGCATGCGAGGATTGTACAGTGGCATCTTGCCTTCATTGGCCGGCATAAGTCATGTTGTAATACAATTCCCATCTTATGAAAAGATTAAGTCATACATGGCAAAAAAGGAAAACACTACAGTTGACAAGCTAAGTCCGGGAAATGTTGCCATTGCTTCTTCAATTTCCAAAGTAATTGCCTCTGTAATGACTTATCCTCATGAGGTGATACGATCCAGGCTACAGGAGCAAGGACAGGCCAAAAATATCAAGGTCCGGTATGGAGGGGTTGTTGATTGCGCTAAGAAGGTGTTCCAGAAGGACGGCTTTCCAGGCTTTTATCGGGGTTGTGCTACCAATCTGTTGAGAACAACTCCATCGGCTGTCATCACATTCACCAGTTATGAAATGATATACAGATTCTTCCATCGTTTTGTTCCTCAGGACAATGTATATCCACAAGGCTATCCTAAATCTACTGATATTAACAAGCCCAAGCCGGAAGACAGTGATGACATGAAGTTTGAAAAAGGCCCTATGGTATGA	1032	0.4496	MSSNGQSSVNSYNIRDLICNAGAGASAGAIAATFVCPLDVIKTRLQVHGLPPGQTGSVIITSLQNIARTEGFRGLYRGLSPTILALLPNWAVYFTVYEQLKGLLRSRDGCHQLTTSENMIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVVPYKSVLSALTRITREEGMRGLYSGILPSLAGISHVVIQFPSYEKIKSYMAKKENTTVDKLSPGNVAIASSISKVIASVMTYPHEVIRSRLQEQGQAKNIKVRYGGVVDCAKKVFQKDGFPGFYRGCATNLLRTTPSAVITFTSYEMIYRFFHRFVPQDNVYPQGYPKSTDINKPKPEDSDDMKFEKGPMV	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4443g00029	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Pral4443g00029	343	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	16	309	IPR044712	GO:0006862\|GO:0055085
	Pral4443g00029	343	Pfam	Mitochondrial carrier protein	20	105	IPR018108	-
	Pral4443g00029	343	Pfam	Mitochondrial carrier protein	213	305	IPR018108	-
	Pral4443g00029	343	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-
	Pral4443g00029	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Pral4443g00029	343	Gene3D	Mitochondrial carrier domain	109	307	IPR023395	-
	Pral4443g00029	343	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Pral4443g00029	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Pral4443g00029	343	MobiDBLite	consensus disorder prediction	324	343	-	-
	Pral4443g00029	343	Gene3D	Mitochondrial carrier domain	3	108	IPR023395	-
	Pral4443g00029	343	MobiDBLite	consensus disorder prediction	318	343	-	-
	Pral4443g00029	343	SUPERFAMILY	Mitochondrial carrier	16	299	IPR023395	-
	Pral4443g00029	343	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Pral4443g00029	343	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Pral4443g00029	343	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Pral4443g00029	343	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Pral4443g00029	343	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4443g00029	Pral-Chr4443	422707	428730	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4443g00029	1	311	Chloroplast and Mitochondria Gene Families	AT1G25380	70.794	2.31e-148	421

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4443g00029	K15115		-	gmx:100816376	534.643