LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4443g00021	ATGCTGAAGTTTTCATTAGAGACGCAGATTTACAGAAGCGTCTGGCTTCCAAAGCAATTCTTGGACTATACAGGATGTGGTAAGAGTACTAATGAGACCATCTTCTTCAGAACGCAAGATGAAGATGATACTCCATCTTCTTTAGCAGCATGTCCAAGGGTTCAGGTTCCAGTGAACATGTTGGCTTTCTCTGCTGATCCATTTACATTCATAGCTTCTGAATTCCATGTTAACATTCAACTTTCTCCTGGTTGTGGTCGATGTTGTTTTGAGAAAGGCTTATGCCGGCTCAACAGCACTGGAGGATTTTATTGTCTCAAATTGAAAGAAGATCAAAATAAAAGACGGCCTTGGAAGCTGGGAACCATAATAGGTTTTGGAGTGGGATTAGGCATTCTGATATTAGCGTTGCTGCTCTGCTTTGGACTCTACAAACACAAACAGAATCCTATATCCCATGTAAGACTTCGATCAACGAATCAATACCCAAATGATGCGGACCCAGACAGTGGCAGACTCTTCTTTGGAGTCCCAATCTTCTCCTACACGGAGCTTCAAGGCGCAACCAACAACTTTGACCCCTCTAACAAACTTGGAGACGGCGGCTTCGGCTCTGTTTACTATGGAAAGCTCCAAGATGGGCGTGAAGTTGCAGTGAAGCACCTATTCAACCACAGCTACAAGCGAGTAGAACAGTTCATGACAGAAGTTGAGATCCTCACTCGCCTACGTCACCGAAATCTTGTCTGCCTCTATGGCTGCACTTCTCGTCAGAGCCATGAGCTCCTTCTTGTCTATGAATACATCCCAAATGGCACCCTTGCCAGTCACCTCCGTGGCAGCTCTGCAAATCCTGCATTGTTGACGTGGCCTGTTCGAATCAAAGTCGCCATAGAAACTGCCAGTGCTTTGGCTTACCTTCATGCCTCTGGCATCATCCATCGTGATGTCAAAACCAACAACATTCTCCTTGACAAGAACTTCTATGTTAAACTTGCGGATTTTGGACTTTCTAGGTTGTTCCCAGATGATGTCTCGCATGTTTCTACGGCTCCACAGGGAACACCAGGCTATCTTGACCCAGAATATCACTACTGCTTTAGGCTGACAGATAAAAGTGACGTGTATAGTTTTGGGGTTGTGCTTATGGAGCTGATATCTTCTATGCCAGCAGTTGATATGGGAAGGAACAAAGATGAGATTACCTTGGCGGGTCTTACAGTTAGGAAGATTCAGAGGAATGAATTTGAGGAGTTGGTGGATCCATGTTTGGGGATTGAGAAGGATAGTGAGGTGAAAAAGAAGGTGTTTGCAGTAGGAGAATTGGCATTTCAGTGTTTGCAGATAGATAAAGAGATGAGGCCTTCCATTGATGAGGTTTTAGAGCTTTTGAGGAAAATCGAAGGTGGGAAAGTAGCAGAAGAAGAAGAAGACAAAGATACTGGGAAAGACGGAGATGGTGGTGAAGTTTCAAAGAATAAAGCCAATATAAAAGCACGAGCAGTGACTTCAATAAGTTTTGATCAGGTAAAGTTGTTCAAGTCATCATCTTCTCCAAACAACATAATCCAAAAATGGGGAAATGGAAAAATTGATCAAGGAAAGTTGTTTAGCGTTTAA	1620	0.4346	MLKFSLETQIYRSVWLPKQFLDYTGCGKSTNETIFFRTQDEDDTPSSLAACPRVQVPVNMLAFSADPFTFIASEFHVNIQLSPGCGRCCFEKGLCRLNSTGGFYCLKLKEDQNKRRPWKLGTIIGFGVGLGILILALLLCFGLYKHKQNPISHVRLRSTNQYPNDADPDSGRLFFGVPIFSYTELQGATNNFDPSNKLGDGGFGSVYYGKLQDGREVAVKHLFNHSYKRVEQFMTEVEILTRLRHRNLVCLYGCTSRQSHELLLVYEYIPNGTLASHLRGSSANPALLTWPVRIKVAIETASALAYLHASGIIHRDVKTNNILLDKNFYVKLADFGLSRLFPDDVSHVSTAPQGTPGYLDPEYHYCFRLTDKSDVYSFGVVLMELISSMPAVDMGRNKDEITLAGLTVRKIQRNEFEELVDPCLGIEKDSEVKKKVFAVGELAFQCLQIDKEMRPSIDEVLELLRKIEGGKVAEEEEDKDTGKDGDGGEVSKNKANIKARAVTSISFDQVKLFKSSSSPNNIIQKWGNGKIDQGKLFSV	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4443g00021	539	Gene3D	Phosphorylase Kinase; domain 1	167	268	-	-
	Pral4443g00021	539	Pfam	Protein tyrosine and serine/threonine kinase	196	463	IPR001245	GO:0004672\|GO:0006468
	Pral4443g00021	539	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	30	527	IPR044652	GO:0004672
	Pral4443g00021	539	FunFam	Wall-associated receptor kinase-like 20	269	477	-	-
	Pral4443g00021	539	ProSiteProfiles	Protein kinase domain profile.	192	467	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4443g00021	539	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	312	324	IPR008271	GO:0004672\|GO:0006468
	Pral4443g00021	539	ProSitePatterns	Protein kinases ATP-binding region signature.	198	220	IPR017441	GO:0005524
	Pral4443g00021	539	PRINTS	Tyrosine kinase catalytic domain signature	306	324	IPR001245	GO:0004672\|GO:0006468
	Pral4443g00021	539	PRINTS	Tyrosine kinase catalytic domain signature	266	279	IPR001245	GO:0004672\|GO:0006468
	Pral4443g00021	539	PRINTS	Tyrosine kinase catalytic domain signature	373	395	IPR001245	GO:0004672\|GO:0006468
	Pral4443g00021	539	Gene3D	Transferase(Phosphotransferase) domain 1	269	481	-	-
	Pral4443g00021	539	SMART	serkin_6	192	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4443g00021	539	CDD	STKc_IRAK	198	467	-	-
	Pral4443g00021	539	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	175	268	-	-
	Pral4443g00021	539	MobiDBLite	consensus disorder prediction	473	492	-	-
	Pral4443g00021	539	SUPERFAMILY	Protein kinase-like (PK-like)	172	464	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4443g00021	Pral-Chr4443	247677	307369	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4443g00021	18	468	Receptor kinase-like Gene Family	AT1G25390	48.571	2.14e-145	431

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Pral4443g00021		PK_Tyr_Ser-Thr	1.8e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4443g00021	-		-	aprc:113871894	507.679