Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4435g00012 ATGGTATATCCACTGTACTTATATAGATGTGTCATAAATCTCTCTAAACTTTCCAATTTCTTCTTTCTTATTTTTTTTTTCACCAACTTAAATTGCAGTGTTAGCCCAATCATTATGCCTTTCAAAGATTTTGTTCGTGAGCTCAGGGATATTCGAGATGGCATGGGAAATATTTCTACAAGAGGGGTAGAAGCAAATCGCATCCCTTGCCGTGGAAGATCTCTTATTGCTCCTGAATTCTCCTCACCAGTTTCGTTAGTGACTCAGCAGAGCCCCTGGGCTAACTTACCATCTGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGCGAAACTTCATGGCCTGGCCGGCGTGCGGTTGTAGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAAATAACAGAGGAGGTGGTAAAGACGCCAGAGCAGTGTGGTTGGCTTACCTTCCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCCGTCCAGTGTTTTATAAAGAGAGAAAGGGTGACTTCGAAATATCTTTTATATCTTGGTTTAAGTCCAGCTCTCTCTGGGGATATGAGTAAACTGCTACTGGCAGCAAAGAAGATTAGACGGACAACGTGTACAGAGTTTATAATATCATTGGTTGCAGATGATTTTTCAAAAGCAAGCAATACGTACGTTGGAAGGCTGAGGTCTAATTTTCTAGGTACCAAGTTCACGATCTTGGATAGTCAACTCCCGCTTGATTCTTCCCTTCCGTTGACTAGTAAATTGCGGCAAAGAATCCGTTCGAAGCAGGTTCTTCAAAGGGCTGCTCTGGCGAAGCATAATGTGGCCACGATATCATATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGCGGTGTACCATGCACTCAATTCCAGTGTCTGCCATCCAAGAAGGGGGCACTGCTCCTACTCCTTTGAAATTTACTAGATTCCCTCATGAGCATCCATCTTCCACGCCCATTTCGAAAGAAAGAAAGCCAGGAGTTGAGTATGGCTCCAATAGCGAAGATAAGCCCCCAGAATCGAGCCACATCACAAGGGAGCCACTGATTTTGAAAAATAAAGCTCCTAGGTGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTCAAGGGACGTGTTACGGTGGCCTCAGTAAAGAACTTCCAGCTCGTAACTGCTGCAGAACCTCAACAAAATGTTTCAGCGGCAGAACAGGATAGGGTGATGCTGCAATTTGGCAAAATTGGAAAGGACATATTCACCATGGATTACCGTTATCCACTCTCTGCATTTCAAGCCTTCGCAATCTGCTTGAGCAGTTTCGACACCAAACCTGCTTGCGAGTGA 1362 0.4486 MVYPLYLYRCVINLSKLSNFFFLIFFFTNLNCSVSPIIMPFKDFVRELRDIRDGMGNISTRGVEANRIPCRGRSLIAPEFSSPVSLVTQQSPWANLPSELLLDIIQRVEASETSWPGRRAVVACASVCRSWRKITEEVVKTPEQCGWLTFPISLKQPGPRETPVQCFIKRERVTSKYLLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFIISLVADDFSKASNTYVGRLRSNFLGTKFTILDSQLPLDSSLPLTSKLRQRIRSKQVLQRAALAKHNVATISYELNVLRTRGPRRMRCTMHSIPVSAIQEGGTAPTPLKFTRFPHEHPSSTPISKERKPGVEYGSNSEDKPPESSHITREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVTAAEPQQNVSAAEQDRVMLQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4435g00012 453 Pfam Tub family 154 448 IPR000007 -
Pral4435g00012 453 MobiDBLite consensus disorder prediction 310 359 - -
Pral4435g00012 453 Pfam F-box domain 93 138 IPR001810 GO:0005515
Pral4435g00012 453 SUPERFAMILY Tubby C-terminal domain-like 142 453 IPR025659 -
Pral4435g00012 453 ProSitePatterns Tub family signature 1. 381 394 IPR018066 -
Pral4435g00012 453 Gene3D - 87 140 - -
Pral4435g00012 453 CDD F-box_AtTLP-like 93 137 - -
Pral4435g00012 453 SUPERFAMILY F-box domain 89 155 IPR036047 GO:0005515
Pral4435g00012 453 PANTHER TUBBY-RELATED 87 451 - -
Pral4435g00012 453 PRINTS Tubby superfamily signature 410 429 IPR000007 -
Pral4435g00012 453 PRINTS Tubby superfamily signature 274 301 IPR000007 -
Pral4435g00012 453 PRINTS Tubby superfamily signature 363 380 IPR000007 -
Pral4435g00012 453 PRINTS Tubby superfamily signature 225 249 IPR000007 -
Pral4435g00012 453 PRINTS Tubby superfamily signature 431 453 IPR000007 -
Pral4435g00012 453 PRINTS Tubby superfamily signature 381 397 IPR000007 -
Pral4435g00012 453 PRINTS Tubby superfamily signature 209 225 IPR000007 -
Pral4435g00012 453 Gene3D Tubby Protein; Chain A 151 453 IPR025659 -
Pral4435g00012 453 ProSitePatterns Tub family signature 2. 438 453 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4435g00012 Pral-Chr4435 49808 52984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4435g00012 71 453 TUB Transcription Factor Family AT1G47270 60.714 3.43e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral4435g00012 Tub 3.8e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4435g00012 K19600 - gmx:100796250 605.905