Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4432g00058 ATGGCTTGCCGGGACTGTGAGGCGAACCTAAATGTGAGGAGGCCTCACTTCTATGAGCTTTATTCCTCCACACCTTGCTCCGACAGACTGAGAATTCCTTCCGGATTCACCCATTGCTTTGAAGGTAGGACGTCTGGTTTAGTCTCATTGACGGGTCCTAGCGGAAATACTTGGCATGTTCAACTGGTTAAGGAGGGGAATGATCTATTCCTCCATCATGGATGGCAGATGTTTTTGGAAGATCATTTTATGGAAGTTGGTGACCTTTTGGTTTTCAGATATGAGGGTCACCTACACTTCAATGTGCTAGTCTTTGATCAAAGAGCATGCGAGAAAGAAGCAGCATTTATATCTAAGTGCAGTCAAAATTCATGTGACGTCAATCATATTAATGCACATAAAAGAAATAGGGAGGAGAATTGTTCTTTGAATGTTGTTGCTGAAGGTGTGCCAAAGAAAATGAGAGGGAGTGCCTTTGAGAACCAGGAACTCAAGACGAGTATAGTTAGTAAAGATTTATCCTTGCTTGAGTGGGTAAAACCAATTAATATGTTCAGAGAAAAAGGAGAATCCTCCAAAGAAGATGCACAACTTAGATGCCCAGCTAGTGATGTTGCTTTGCCTTCTCAAATGGATGATAGCAACGAATGTGAAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCCTTGTATGAATAATAGAGCTTGTCTGTCAAAGTTATCGTCACATGATGAGAAAAGATTAGCTCAATTGTTTACTTCCTCTTTCCCGTATTTCGTGAGAATCATGAAAAGCTTCAACATCAGTGGTTCATATACTCTGAATATTCCGTATCAATTTTCAATGGTGCATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATGTAAAAGGGGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTACATACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAAGTTGGGGATATCTGCATTTTTGAACTTGTCCATGAGCGTGAATTACGGGTCCGCATTGTTGGAGTAGGAAAAGATGGGATAGACTGTCAGGGTGGGAAAGTAGCTTCTAGTAGGCCTCTTACAGGACATTCCATCAATTCCCATAGAACTTCTCGATGTATGCCGATGAAGGCCAAAGTCAATCCAAAATGCAATGGAAATGTTGATCTATCTGATAAGAAGTGGTCAAGGATGTGTCAGGATGCTGTTTTGTCTGCGGATAAAAAGAATCCTGGCGGAGTGTCGAAGGCTTCTAAGAAGACAGGGATTTGCCCTCAGTCAAAAGCTGCCCATAATAAGTTGGCTGTTCGGAGAAGACATCGAACTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGCTGTTTGCACTTGATGAACAAAGAGCAGCTCAGGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAGTTCAATGTCAGCGGATCATACACTTTGAAAATCCCATATCAGTTTTCTGCAGCGCATCTTCCATCATACAAAACAGAAGTTGTGCTTCGTAATTTGAGAGGTGAATGTTGGGCTGTGAACTCTGTTCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGTGGGGGATGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTCGAACTTGTTGGTCAGTATGAAATGCAAGTTTATATTTCTGGGATTGGTAAGGAAGGGCTTGACCATCAGAACAGGGAACCAAAATCTAGTAGATTACCTGTAGTTCCAACAACCAGTAAACACTCATGCTTGTGA 1848 0.4188 MACRDCEANLNVRRPHFYELYSSTPCSDRLRIPSGFTHCFEGRTSGLVSLTGPSGNTWHVQLVKEGNDLFLHHGWQMFLEDHFMEVGDLLVFRYEGHLHFNVLVFDQRACEKEAAFISKCSQNSCDVNHINAHKRNREENCSLNVVAEGVPKKMRGSAFENQELKTSIVSKDLSLLEWVKPINMFREKGESSKEDAQLRCPASDVALPSQMDDSNECEEAAMQIGSGKEDDPCMNNRACLSKLSSHDEKRLAQLFTSSFPYFVRIMKSFNISGSYTLNIPYQFSMVHLPNCKIKIILHNVKGERWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVHERELRVRIVGVGKDGIDCQGGKVASSRPLTGHSINSHRTSRCMPMKAKVNPKCNGNVDLSDKKWSRMCQDAVLSADKKNPGGVSKASKKTGICPQSKAAHNKLAVRRRHRTEDELSSQAKAGLRMLFALDEQRAAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVVLRNLRGECWAVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVGQYEMQVYISGIGKEGLDHQNREPKSSRLPVVPTTSKHSCL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4432g00058 615 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Pral4432g00058 615 SUPERFAMILY DNA-binding pseudobarrel domain 484 585 IPR015300 -
Pral4432g00058 615 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 359 IPR044837 -
Pral4432g00058 615 SUPERFAMILY DNA-binding pseudobarrel domain 255 356 IPR015300 -
Pral4432g00058 615 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Pral4432g00058 615 CDD B3_DNA 22 106 IPR003340 GO:0003677
Pral4432g00058 615 CDD B3_DNA 260 354 IPR003340 GO:0003677
Pral4432g00058 615 Gene3D - 9 110 IPR015300 -
Pral4432g00058 615 ProSiteProfiles B3 DNA-binding domain profile. 491 587 IPR003340 GO:0003677
Pral4432g00058 615 Gene3D - 243 357 IPR015300 -
Pral4432g00058 615 Gene3D - 476 586 IPR015300 -
Pral4432g00058 615 SMART B3_2 491 589 IPR003340 GO:0003677
Pral4432g00058 615 SMART B3_2 17 108 IPR003340 GO:0003677
Pral4432g00058 615 SMART B3_2 262 358 IPR003340 GO:0003677
Pral4432g00058 615 Pfam B3 DNA binding domain 27 107 IPR003340 GO:0003677
Pral4432g00058 615 Pfam B3 DNA binding domain 491 578 IPR003340 GO:0003677
Pral4432g00058 615 Pfam B3 DNA binding domain 266 354 IPR003340 GO:0003677
Pral4432g00058 615 MobiDBLite consensus disorder prediction 592 615 - -
Pral4432g00058 615 MobiDBLite consensus disorder prediction 601 615 - -
Pral4432g00058 615 ProSiteProfiles B3 DNA-binding domain profile. 262 358 IPR003340 GO:0003677
Pral4432g00058 615 CDD B3_DNA 489 583 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4432g00058 Pral-Chr4432 324617 328431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4432g00058 14 356 B3 DNA Binding Superfamily AT3G18990 25.414 7.45e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4432g00058 B3 5.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4432g00058 - - pcin:129303869 1104.74