Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4430g00048 ATGGAAAGGCAGCGTGAGCAGGATAGTGAAGCAGCCATGCCATCGAGAGCCGTTGAAGTTGTAAGCAATCGTATAGCACCAGCACCTCATGTTGATGATGGTTTCTCCAGTCACAAGAAACCCAGGTGGAGGGACTTTCTATCCCATGTAGGTCCTGGTTTTTTGGTGTCCATGGCTTACCTTGATCCTGGAAACTGTAACTCTCTCTCTCTCTCTCTGCGCGCCTGCGTGCGTGTGTTTTCTATAATCTGTATAACTATTTGTATGTTCGTTTGCTGTAATCTAGTGGAAACTGACCTGCAAGCTGGAGCTAACCACAGATATGAGCTGCTATGGGTGATACTTATTGGGTTATTTTTTGCTCTCATTATTCAGTCATTGGCGGCAAATCTTGGTGTAACCACCGGGAAGCACCTTTCAGAGTTATGTAAAGTGGAGTACCCATCACTAGTGAAGTACTGCTTATGGCTGCTGGCTGAGATTTCTGTCATAGCTGCGGATATAGCCGAAGTTGTTGGCACAGCCTTTGCGCTCAACATACTGTTCCACATCCCACTATGGGCAGGAGTTCTCTTGACAGGCTTCTCCACTCTTTTGCTTCTTGGTCTCCAGAGATTTGGCGTTAGGAAGCTGGAACTGCTGATAACAACTCTAGTATTTATAATGGCAGGATGCTTCTTTGCGGAAATGAGCTATGTAAAACCACCAGCTTCTGATGTATTGAAAGGAATGTTTGTCCCTAGGCTTGATGGTCATGGAGCCACTGCTGACGCCATTGCCCTTTTTGGAGCACTCATAATGCCGCACAACCTCTTTCTCCATTCTGCTCTTGTGCTCTCTAGAAAAGTACCCAACTCTGTCCGTGGCATCAATGACGCATGTAGATACTTTCTAATAGAAAGTGGGTTTGCTCTGTTTGTAGCATTTCTAATAAACATAGCAGTGGTTTCAGTATCAGGCAAAGTATGCTCAGCAAATAATCTTTCAGCTGGAGATATAGAAAAATGCGACGATCTCTCCCTTGATTCTGCCTCTTTTCTTCTCAAGAATGTGTTGGGAAGGTCCAGCTCAACAGTGTATGCCATAGCACTTTTGGCCTCTGGACAAAGCTCTACCATCACTGGAACCTATGCAGGGCAGTACATCATGCAGGGATTCTTGGATTTGAGGATGAAAAAATGGATGCGGAATTTGATGACTAGGAGTGTTGCCATAGTACCTAGTCTTGTCGTTGCTGTTATCAGCGGGTCTTCGGGTGCGAGCCGCCTTATTATCATTTCCTCGATGATACTTTCATTTGAACTTCCATTTGCTTTGATTCCACTGCTCAAGTTCAGCAGCAGCAGCACCAAGATGGGACCTCACAAGAATTCTAGAATCATCATTGTAATTTCATGGATCCTGGGCTTGGGAATCATTGGCATCAACGTGTACTACCTAAGCACAGGTTTTGTGGAGTGGCTAATTCACAGCAGTCTCCCGAAAGTGGCAAACGTTATCATTGGGATCATAGTATTTCCTCTTATGGCCATTTATGTTGTTGCCGTTATCTACCTCACCTTCAGACACGACACTGTCGATACATTCATAGAGACTCAGAACGACTCTCCAGAGCCAACCCACATGGAATTGGGTCCAATTCCTTTTAGAGAGGATTTAAGGGATATCCAACTTCCAGACTAA 1683 0.4498 MERQREQDSEAAMPSRAVEVVSNRIAPAPHVDDGFSSHKKPRWRDFLSHVGPGFLVSMAYLDPGNCNSLSLSLRACVRVFSIICITICMFVCCNLVETDLQAGANHRYELLWVILIGLFFALIIQSLAANLGVTTGKHLSELCKVEYPSLVKYCLWLLAEISVIAADIAEVVGTAFALNILFHIPLWAGVLLTGFSTLLLLGLQRFGVRKLELLITTLVFIMAGCFFAEMSYVKPPASDVLKGMFVPRLDGHGATADAIALFGALIMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALFVAFLINIAVVSVSGKVCSANNLSAGDIEKCDDLSLDSASFLLKNVLGRSSSTVYAIALLASGQSSTITGTYAGQYIMQGFLDLRMKKWMRNLMTRSVAIVPSLVVAVISGSSGASRLIIISSMILSFELPFALIPLLKFSSSSTKMGPHKNSRIIIVISWILGLGIIGINVYYLSTGFVEWLIHSSLPKVANVIIGIIVFPLMAIYVVAVIYLTFRHDTVDTFIETQNDSPEPTHMELGPIPFREDLRDIQLPD 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4430g00048 560 PRINTS Natural resistance-associated macrophage protein signature 428 447 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 PRINTS Natural resistance-associated macrophage protein signature 183 202 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 PRINTS Natural resistance-associated macrophage protein signature 208 229 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 PRINTS Natural resistance-associated macrophage protein signature 258 281 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 PRINTS Natural resistance-associated macrophage protein signature 396 413 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 PRINTS Natural resistance-associated macrophage protein signature 155 181 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 PRINTS Natural resistance-associated macrophage protein signature 368 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 NCBIfam Nramp family divalent metal transporter 100 447 - -
Pral4430g00048 560 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 22 526 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 Pfam Natural resistance-associated macrophage protein 96 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 Hamap Divalent metal cation transporter MntH [mntH]. 32 484 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral4430g00048 560 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 96 450 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4430g00048 Pral-Chr4430 295513 298812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4430g00048 22 560 Inorganic Solute Cotransporters AT1G15960 55.576 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4430g00048 K21398 - gmx:100787785 751.895