Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4430g00043 ATGGATGATCCAGAATCTACAATGACTACAGTTGCTAATTTTGTTGAGCAACTGCATGCCAACTTGTCATCACCACTTGAGAAGGAATTTATCACAGCACGTTTGCTAGGCATTGCCAGGGCAAGAAAGGATGCAAGAACACTTATTGGTTCTCACGCCCAAGCAATGCCATTGTTCATAAGCATTCTCAGAAATGGAACCTCTCTGGCAAAAGTTAATGTTGCTGCCACTCTCAGTATCCTGTGCAAAGATGAGGATTTGAGGTTAAAAGTGCTTCTTGGTGGTTGTATCCCACCTTTACTGTCACTTTTGAAGTCTGAAACCACAGAGGCAAGGAAGGCTGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATGTTGGCATGAAAATTTTTGTCACAGAGGGTGTAGTTCCAACTTTATGGGATCAACTAAATCCAAAAAGCAAGCAAGACAAAGTTGTGGAGGGTTTCATCACTGGGGCATTGAGAAATCTGTGTGGTGACAAAGACAGATACTGGAAAGCAACATTGGAAGCTGGGAGTGTGGATATTATTGTGGGTCTTTTGTCTTCAAGCAATGCTGTTGCTCAGTCAAATGCAGCTTCTCTGCTAGCACGACTGGTGCTGGTTTTCAGTGATAGCATCCCCAAAGTAATAGAATCTGGCGCAGTCAATGCTTTACTTCGGCTTGTTGGTCAGGAAAATGATATTTCTGTCCGTGCAAGTGCTGCTGATGCTCTAGAGGCCCTTTCATCAAAGTCAACTATGGCAAAGAAAGCCATTATCAGTGCAGATGGTGTTCCAATTCTTATTGGGGCTATAATTGCTCCTTCTAAAGAGTGTATGCAGGGAAACGGCCAGGAACTGCAGGAGCATGCAACGCAAGCTTTGGCAAATATTTGTGGTGGCATGTCATCTTTAATACTATATCTTGGAGAACTCTCCCAATCTCCTCGCCTAGCTGCACCAGTTGGTGATATAATTGGAGCTCTTGCTTATACACTGATGGTGTTTGAGGATAAACATGATGTTGATGGGAAGCCTTTTGATGCAACTCAAATAGAGGATATTCTAGTGGGACTATTAAAGCCTCGAGATAACAAGCTGATTCAAGAGCGAGTATTAGAGGCCATGGCTAGTCTATATGGAAACATCTATCTCTCGAAATGGCTCGAGCATGCAGATTCAAAAAAGTTTCTTATTGGACTCATTACTATGGCTGCTGCTGATGTGCAGGACTATCTTATACTCTCCTTGACAAGCTTATGTTGTGACAAGGTAGGAATATGGGAGGCCATAAACAGAAGAGAAGGCATCCAGTTACTTATCGCAATGCTGGGACTGTCCGGTGAGCAGCATCAAGAGTATGCAGTTCAGTTGCTATCAACTTTAATTCACCAGATTGATGACAGCAAATGGGCAATCACTGCGGCCGGAGGAATTCCTCAATTGGTTCAGTTATTAGAGACAGGATCGCAGAAGGCTAGAGAGGATGCTGCTCATATTCTGTGGAACCTGTGCAGTCACAGTGAAGATATTCGTGCATGTGTTGAAAGTGCAGGGGCCATACCGTCATTCTTATGGCTTTTAAAGATTGGTGGACCTAGAGGACAAGAGGCTTCTGCCAAAGCACTTATTAAGCTTGTGCGAATAGCTGATTCTGCTACCATTAATCAATTGTTGGCATTGCTTCTTGGGGACACTCCAGGCTCAAAGGTCCATATAATTCTTGTCTTAGGTCATGTACTTACTATGGCTTCACAGATGGACCTCCTTCAGAAGAGTTCTGCAGCTAATAAGGGGTTGAGAACTCTTGTTCAGGTTCTCAACTTATCAGATGAGGAAACCCAGCAACATGTGGCTTCTGTCCTAGCTGATTTGTTCAGTGCAAGACAAGACATTTGTGATAGCCTCCTTGCCACTGATGAAATTGTGCGTCCTTGCATGAAGCTTTTGACCAGCAAAAATCAAGTAGTTGCAACTCAATCAGCTCGAGCATTGGGTGCTCTGTCTCGTCCAACACACAGTGGATCTGCCAATAAGATGCCTTATATTGGAGAGGAGGATGTCAAGCCACTAATTAAATTGGCTAAAACTTCCTCCATTGATGCTGCTGAAACTGCAGTTGCTGCACTGGCCAATCTTCTCTTTGATACATCTATTGCTGCTGAAGCTTTGGCAGGAGATCTTGTTTCATCTTTAACAAGAGTTCTGGCAGAAGGATCTTTGGAAGGCAAACAAAATGTATCACGCGCACTTCATCAGTTACTGAAACATTTTCCTGTTGGTGATGTTCTGAAGGGAGATGCTCAGTACCGTTTCACTATTCTTGCACTTCTTGGTTCCTTGAGTGCTATGGATATGAATGGAACTGATGCTGCTGAGGCTTTGGAAGTAGTTGCACTGCTTTCCCGGAAAAAACAGGACGACAATTTCACTTGCACTCTGTGGTCTGCATTTGCAGAAACACCATCCAATTTAGAACCTCTTGTACGCTGCCTGGCTGAGGGGCCTCCCCAAGTGCAGGATAAAGCAATTGAAATTCTGTCTAGACTGTGTGGTGATCAATTAGTTGTTCTTGGGGATTTGTTGGCTGCCATGTCTAGATCCATTATTTCATTAGCTGATAGAATGATGAACTCCTCCAGTTTAGAAGTTAAAGTTGGAGGAGCTTCCTTACTCATTTGTGCTGCAAAGGAGCATAAAGAGCTGTCAATGGATGTACTTGACACTTCTGGGGACCTAAAACCATTAATATATGCTTTAGTAGATATGCTGAAACAGAACTCTAGCTGTTCATTAGAGGTTGAAGGGAAAACTTCTAGAAATTTTATGGTGAAGAGTGCATTTCAGGAAGTTGATCTCGATATTCCTGATCTGGCCAAAGTCTCAGGTGTTACTGTTGCCTTGTGGTTACTCTCAATCATTGCTTCTTCCAATACAAAGAACAAACTCACAATTGTGGAAGCTAGTGGACTTGAGTCTCTCTCTGAAAAGCTTGCAAACCATACTTCCAATCCGCAGGCTGAAATTGAGGATGCAGAAGGAATATGGATAAGCGCCTTGCTCCTGGCCATTTTGTTTCAAGATGGAAATGTTGTTCTATCTCCAGTAACAATGCATATTTTACCTTCTCTCTCTCATTTACTGCAGTCTGAAGAAATGGCATATAAATATTTTTCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAATAAGGGAATAGCTCTTGCTGTTGCAAACTCTGGTGCCGTTGCCAGATTGATTTCTGTGATTGGCTATTTAGAGTCAGATATACTAAACACTGTTGCTTTATCAGATGATTTTTCACTGGTGAGAAATCCTGATCAAGTAGTTTTGAATCACCTTTTTGAAATTGAAGATATAAGATTGGGGTCTACTGCACGGAAATCTATACCTCTCTTGGTGGATCTATTGAGACCAATTCCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTAAAATCTTGACATGCATTGCAGATGGAAGTGATACAAACAAAACAATTATGGCTGAAGCAGGCGCTTTGGAAGCTTTAACAAAATACCTGTCTTTGAGCCCTCAGGACTCAACTGAGGCCAGCATTTCGGAGCTATTAAGAATACTATTTTGCAATTCTGACCTTATTAAACATGAAGCATCAGCAAGTTCCCTGAACCAACTCATTGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTTATGAACTTTTTGATGCCGAGAGTATTAGAAACTCAGAATTAGCTAAACAGGCCATTCAGCCTTTGGTTGACATGCTTAATACAGCATCAGGTAGCGAGCAGGAGGCTGCTCTAACTGCATTAATCAAATTAACATCTGGGAATTCTCCAAAAGCATCTATTTTTGCTGATGTAGAAGGGAACCCACTTCAGAGTTTATACCAGATATTGTCCTCCGCTTCATCCTTGGAACTGAAGAGCAATGCCGCACAACTCTGCTTTGTCCTTTTTGCTAGCAGGAAGATTAGATCTGATCCGCTTGCCTCAGAATTCATAGAACCCCTTGTTTCACTGATGCAGTCTGGTTCTGATCTGGCAATAGAAGCTGGGGTTTTTGCTTTTGAGAGATTATTGGAAGATGAACAACATGCGGAGCTTGCAGTAGCCTACAATGTTGTGAATCTCCTTGTTAGTTTGGTTGTGGGTTCCAACTATCAGCTGATTGAGGCCACCATATCTGCTCTCATCAAACTTGGCAAAGATAGGACGCCATGCAAACTAGACATGGTTAAAGCTGGCATTCTTGACAATTGTCTGAAGTTACTTGAATTTGCACCTAGCTCACTGTGCTCCACAATCGCTGAACTATTCCGCATTTTAACAAATAGTAGTGCAATTGCTAGAAGTTCAGCAGCTGCAGAAATTGTAGAACCCCTTTTTCAAGTTCTGCTCCGTCTAGATTTTGACTTGTGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAGCCACAAAGTCTTGCAACCTTAAAACTAACTCCTAGCCAAGTTATTGAGCCCTTAATCTCTTTCCTGGAATCCCCATCCCAGGCCATTCAGCAACTTGGCACTGAACTGTTGTCTCATCTTCTTGCACAGGAACATTTTCAGAAAGATATTAAAACAAAGAATGCTGTAGTTCCTCTTGTTCAACTTGCAGGAATTGGAATACTGAACTTACAGCAAACAGCAATAAAAGCATTGGAGAAAATATCCAAAAGATGGCCAAAAGCAGTTGCTGATGCAGGAGGCATTTTTGAGCTTGCAAAAGTTATTATTCAAGATGATCCTCAGCCACCACATGCACTCTGGGAATCAGCTGCTTTGGTTCTTTCTAATGTGCTATGCTCCAATGCTGATTATTATTTTAAAGTTCCTGTGGTAGTTCTTGTGAAACTTCTGCACTCAACAGTTGAGAATACCATTAGTGTAGCACTGAATGGCCTAATGATTCATGAAAGAAGCGATGCTTCAAGCGCTGAACAGATGATGGAAGCTGAAGCTATAGATGTTCTGTTAGACCTTTTAAGATCTCATCAATGTGAAGAAGCATCTGGGAAATTACTTGAAGCTTTATTCAACAATGTGAAAATAAGAGAGATGAAGGCATCTAAGTATGCAATAGCACCGTTATCTCAGTTTCTGTTGGATCCGCAGACCAGATCACCGTCTAGCAAGCTTCTTGTTGCTTTAGCTTTGGGAAATATTTCCCAGCATGAAGGACATGCTAGAGCTAGTGGTTCTGTTTCTGCTTGTCGTGCATTGGTAAGTTTACTTGAGGACCAGCCAACGGAAGAAATGGTGATGGTTGCTATTTGTGTGCTGCAAAACTTCGTCATGAACAGCAGGACTAATAGGCGAGCTGTTGCAGAAGCTGGTGGTATACTGGTCATTCAGGAATTACTGCTGTCTCCAAACCTAGAAATTGCAGGACAAGCGCTGCTGATCCGTTTTTTATTTTCTACTCACACACTACAAGAATATGTGTCAAATGAGCTGATCAGATCTCTGACAGCTGCACTGGAAAGAGAGTTGTGGTCAACAGCCACAATCAATGAAGAGGTTTTGAAAACTCTGCATGTCATATTCACAAACTTCCCTAAGCTCCATGTGTCTGAAGCAGCAACTCTATGCATTCCTCATTTGGTAGGAGCTCTCAAATCTGGTAGTGAAGTGGCTCAAGACTCTGTACTAGACACCTTGTGCTTGCTAAGACATTCTTGGTCAACCATGTCAATAGATGTAGCAAAGTCTCAGGCTATGATCGCTGCTGAAGCCATTCCCATCCTGCAAATGCTCATGAAAACCTGCCCCCCAAATTTCCACGAGAGAGCAGATAGTCTTCTGCATTGCTTACCAGGTTGTTTGACAGTCACCATTAAACGTGGAAACAACCTCAAGCAAGCTATGGGAAGTACAAATGCATATTGCCAGTTAACAATAGGCAATGGTCCTCCCAAACAAACCAAGGTTGTAAGTCACAGTATTTCGCCAGAATGGAAGGAAGGATTCACATGGGCGTTTGATGTGCCTCCAAAGGGCCAGAAGTTGTACATCATATGCAAAAGCAAAAATACTTTTGGCAAGGCAACACTTGGAAGAGTTACCATACAAATTGATAAAGTAGTAAACGAGGGAGTTTACAGTGGAATATTCAGTCTTAATCACGACAGAAACAAAGATGGTTCTTCCCGAACTCTTGAAATTGAGATTATATGGTCCAACAGGATCTCTGATGATGACCTTTGA 6318 0.4232 MDDPESTMTTVANFVEQLHANLSSPLEKEFITARLLGIARARKDARTLIGSHAQAMPLFISILRNGTSLAKVNVAATLSILCKDEDLRLKVLLGGCIPPLLSLLKSETTEARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKSKQDKVVEGFITGALRNLCGDKDRYWKATLEAGSVDIIVGLLSSSNAVAQSNAASLLARLVLVFSDSIPKVIESGAVNALLRLVGQENDISVRASAADALEALSSKSTMAKKAIISADGVPILIGAIIAPSKECMQGNGQELQEHATQALANICGGMSSLILYLGELSQSPRLAAPVGDIIGALAYTLMVFEDKHDVDGKPFDATQIEDILVGLLKPRDNKLIQERVLEAMASLYGNIYLSKWLEHADSKKFLIGLITMAAADVQDYLILSLTSLCCDKVGIWEAINRREGIQLLIAMLGLSGEQHQEYAVQLLSTLIHQIDDSKWAITAAGGIPQLVQLLETGSQKAREDAAHILWNLCSHSEDIRACVESAGAIPSFLWLLKIGGPRGQEASAKALIKLVRIADSATINQLLALLLGDTPGSKVHIILVLGHVLTMASQMDLLQKSSAANKGLRTLVQVLNLSDEETQQHVASVLADLFSARQDICDSLLATDEIVRPCMKLLTSKNQVVATQSARALGALSRPTHSGSANKMPYIGEEDVKPLIKLAKTSSIDAAETAVAALANLLFDTSIAAEALAGDLVSSLTRVLAEGSLEGKQNVSRALHQLLKHFPVGDVLKGDAQYRFTILALLGSLSAMDMNGTDAAEALEVVALLSRKKQDDNFTCTLWSAFAETPSNLEPLVRCLAEGPPQVQDKAIEILSRLCGDQLVVLGDLLAAMSRSIISLADRMMNSSSLEVKVGGASLLICAAKEHKELSMDVLDTSGDLKPLIYALVDMLKQNSSCSLEVEGKTSRNFMVKSAFQEVDLDIPDLAKVSGVTVALWLLSIIASSNTKNKLTIVEASGLESLSEKLANHTSNPQAEIEDAEGIWISALLLAILFQDGNVVLSPVTMHILPSLSHLLQSEEMAYKYFSAQAMASLVCNGNKGIALAVANSGAVARLISVIGYLESDILNTVALSDDFSLVRNPDQVVLNHLFEIEDIRLGSTARKSIPLLVDLLRPIPERPSAPPVAVKILTCIADGSDTNKTIMAEAGALEALTKYLSLSPQDSTEASISELLRILFCNSDLIKHEASASSLNQLIAVLRLGSRNARYSAARALYELFDAESIRNSELAKQAIQPLVDMLNTASGSEQEAALTALIKLTSGNSPKASIFADVEGNPLQSLYQILSSASSLELKSNAAQLCFVLFASRKIRSDPLASEFIEPLVSLMQSGSDLAIEAGVFAFERLLEDEQHAELAVAYNVVNLLVSLVVGSNYQLIEATISALIKLGKDRTPCKLDMVKAGILDNCLKLLEFAPSSLCSTIAELFRILTNSSAIARSSAAAEIVEPLFQVLLRLDFDLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQKDIKTKNAVVPLVQLAGIGILNLQQTAIKALEKISKRWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLCSNADYYFKVPVVVLVKLLHSTVENTISVALNGLMIHERSDASSAEQMMEAEAIDVLLDLLRSHQCEEASGKLLEALFNNVKIREMKASKYAIAPLSQFLLDPQTRSPSSKLLVALALGNISQHEGHARASGSVSACRALVSLLEDQPTEEMVMVAICVLQNFVMNSRTNRRAVAEAGGILVIQELLLSPNLEIAGQAXLLIRFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFTNFPKLHVSEAATLCIPHLVGALKSGSEVAQDSVLDTLCLLRHSWSTMSIDVAKSQAMIAAEAIPILQMLMKTCPPNFHERADSLLHCLPGCLTVTIKRGNNLKQAMGSTNAYCQLTIGNGPPKQTKVVSHSISPEWKEGFTWAFDVPPKGQKLYIICKSKNTFGKATLGRVTIQIDKVVNEGVYSGIFSLNHDRNKDGSSRTLEIEIIWSNRISDDDL 2106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4430g00043 2106 Pfam Armadillo/beta-catenin-like repeat 478 514 IPR000225 GO:0005515
Pral4430g00043 2106 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1977 2082 IPR035892 -
Pral4430g00043 2106 ProSiteProfiles C2 domain profile. 1959 2076 IPR000008 -
Pral4430g00043 2106 Pfam C2 domain 1979 2078 IPR000008 -
Pral4430g00043 2106 CDD C2 1980 2070 - -
Pral4430g00043 2106 Gene3D C2 domain 1979 2104 IPR035892 -
Pral4430g00043 2106 SMART arm_5 1177 1217 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 1387 1427 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 84 124 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 986 1035 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 174 215 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 260 308 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 1717 1761 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 1259 1300 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 1514 1555 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 596 635 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 637 678 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 217 258 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 1805 1845 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 430 472 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 724 764 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 129 173 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 683 723 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 516 556 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 474 514 IPR000225 GO:0005515
Pral4430g00043 2106 SMART arm_5 1429 1469 IPR000225 GO:0005515
Pral4430g00043 2106 Gene3D - 343 592 IPR011989 -
Pral4430g00043 2106 Gene3D - 970 1126 IPR011989 -
Pral4430g00043 2106 SUPERFAMILY ARM repeat 1147 1553 IPR016024 -
Pral4430g00043 2106 Gene3D - 593 943 IPR011989 -
Pral4430g00043 2106 SUPERFAMILY ARM repeat 1579 1976 IPR016024 -
Pral4430g00043 2106 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1773 1816 IPR000225 GO:0005515
Pral4430g00043 2106 Gene3D - 163 342 IPR011989 -
Pral4430g00043 2106 SUPERFAMILY ARM repeat 44 280 IPR016024 -
Pral4430g00043 2106 Gene3D - 3 162 IPR011989 -
Pral4430g00043 2106 Gene3D - 1582 1978 IPR011989 -
Pral4430g00043 2106 SUPERFAMILY ARM repeat 354 770 IPR016024 -
Pral4430g00043 2106 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 228 272 IPR000225 GO:0005515
Pral4430g00043 2106 SUPERFAMILY ARM repeat 833 1106 IPR016024 -
Pral4430g00043 2106 Gene3D - 1127 1316 IPR011989 -
Pral4430g00043 2106 Gene3D - 1317 1581 IPR011989 -
Pral4430g00043 2106 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 485 527 IPR000225 GO:0005515
Pral4430g00043 2106 SMART C2_3c 1979 2075 IPR000008 -
Pral4430g00043 2106 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 2100 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4430g00043 Pral-Chr4430 254553 264746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4430g00043 445 687 U-box Gene Family AT2G23140 28.800 7.83e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4430g00043 - - aprc:113846793 3304.23