Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4430g00020 ATGTTCCCTTTCTCTACTTCCGCAATCTCTTCATCTTCATCTTCCATCTCCAAGACAAGGAGAAGAAAGAGAAGTCTGTGTGAGATGGCAGGTTTCAGCGGTGACGAAACTGCTCCTTTCTTTGGCTTCCTCGGAGCCGCTGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACTGCAAAGAGTGGAGTAGGCGTGGCTTCCATGGGAGTCATGCGACCTGAGCTGGTCATGAAATCCATTGTTCCAGTAGTTATGGCTGGAGTGCTGGGTATTTATGGTCTAATTATCGCTGTTATTATTAGTACTGGAATAAACCCCAAGGCTAAATCATACTATCTCTTTGATGGCTATGCCCACTTGTCATCTGGCCTTGCTTGTGGCCTTGCTGGACTCTCTGCTGGAATGGCAATTGGAATTGTTGGTGATGCTGGAGTTCGGGCGAACGCCCAGCAACCAAAGCTGTTTGTGGGTATGATTCTTATATTGATCTTTGCTGAAGCTCTTGCCCTCTATGGCCTTATCGTGGGTATCATTCTCTCATCCCGAGCAGGCCAATCTCGTGCTGATTAG 579 0.4819 MFPFSTSAISSSSSSISKTRRRKRSLCEMAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4430g00020 192 PRINTS Vacuolar ATP synthase 16kDa subunit signature 57 81 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pral4430g00020 192 PRINTS Vacuolar ATP synthase 16kDa subunit signature 83 107 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pral4430g00020 192 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 160 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pral4430g00020 192 PRINTS Vacuolar ATP synthase 16kDa subunit signature 161 184 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pral4430g00020 192 SUPERFAMILY F1F0 ATP synthase subunit C 41 104 IPR035921 -
Pral4430g00020 192 Pfam ATP synthase subunit C 44 103 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pral4430g00020 192 Pfam ATP synthase subunit C 124 182 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pral4430g00020 192 Gene3D - 38 189 IPR035921 -
Pral4430g00020 192 NCBIfam V-type ATPase subunit C 40 148 IPR011555 GO:0033179|GO:0046961|GO:1902600
Pral4430g00020 192 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 31 188 - -
Pral4430g00020 192 FunFam V-type proton ATPase proteolipid subunit 38 189 - -
Pral4430g00020 192 CDD ATP-synt_Vo_c_ATP6C_rpt1 40 107 - -
Pral4430g00020 192 SUPERFAMILY F1F0 ATP synthase subunit C 114 183 IPR035921 -
Pral4430g00020 192 CDD ATP-synt_Vo_c_ATP6C_rpt2 116 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4430g00020 Pral-Chr4430 152755 169016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4430g00020 29 192 Primary Pumps ATPases(2) AT2G16510 98.171 1.11e-110 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4430g00020 K02155 - gmx:100777816 287.73