Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4430g00016 ATGAAGATTGGACACGAGGGTCTCGCACAGTTGATATTTTCTCAACCTTTGACAGGAGTTTCCAAAGATGAACTGTGTGGGCAATTCTTTGATGCTCTGGAGAAAGTCCACTTCTTTAGGACAAATCCTGATGGAACTGATGACTCAGTGCAACTGGAGAAAGCATCTCGTATATTTAATGATGCTGCAACGGAGATGGAGAGATCTGAATGCCAGGAGTTTGGTCTAAAGAACTTGGCTGAATTGCTGAAATCACAAGGTAATAAGGCAATGCAATTGAAGAAATACCCTGATGCAATTGATTTGTATACTTGTGCAATTGCACTTTGTGAAGAGAATGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAGGTCCACAAATACACAGAAGCAATCCAAGACTGTCTTAAGTCTATTGAGATTGACCCGAACTATAGCAAGGCATACAGTCGACTGGGTTTAGCGTATTATGCTCAGGGAAACTACAGAGATGCCATTGATAAAGGGTTTAGGAAAGCCTTGCTGTTGGATCCAAGTAATGAGTCGATTAAAGAAAATATACGGGTTGCTGAGCAAAAATTGATAGAAGAGCAACATCGTGCAGATCACAGTCAGAATTCAAGATCATCTCAGGAGTCTCAGAACCAGTCCGCACGAGGGTCAAGAGGTAATGCAGCTCCATCACCATTTGACTCGATGCCTTTTAATGCCAACGATCTTGCAAGCATGTTTATGAACATAGCCGCAAACACTGCCAATGCGTATCAAGGACAGCATCCCCAGGAGCGGCAAGGAGAAGATAGCAGCACCAATTCATCTAATGAACCTGAAATAAGAATCGGGAGCAATATTAATTTAAACTTGAACCAAATGCCCGAAGATTTGACGGGCGCTTTCAGGTCTGTGATGGAAGTGTTATCTGGGGCAGCGCCTCCAGGCCGCGAGCAGCCACAAGATCACTCCAACGGAAGAACTGCGCCAAACTAG 993 0.4421 MKIGHEGLAQLIFSQPLTGVSKDELCGQFFDALEKVHFFRTNPDGTDDSVQLEKASRIFNDAATEMERSECQEFGLKNLAELLKSQGNKAMQLKKYPDAIDLYTCAIALCEENAVYYCNRAAAYTQVHKYTEAIQDCLKSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFRKALLLDPSNESIKENIRVAEQKLIEEQHRADHSQNSRSSQESQNQSARGSRGNAAPSPFDSMPFNANDLASMFMNIAANTANAYQGQHPQERQGEDSSTNSSNEPEIRIGSNINLNLNQMPEDLTGAFRSVMEVLSGAAPPGREQPQDHSNGRTAPN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4430g00016 330 SUPERFAMILY TPR-like 79 193 IPR011990 GO:0005515
Pral4430g00016 330 Pfam Tetratricopeptide repeat 114 147 IPR001440 GO:0005515
Pral4430g00016 330 Coils Coil 182 202 - -
Pral4430g00016 330 PANTHER LD24721P 53 318 IPR047150 -
Pral4430g00016 330 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 75 226 - -
Pral4430g00016 330 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Pral4430g00016 330 MobiDBLite consensus disorder prediction 209 225 - -
Pral4430g00016 330 MobiDBLite consensus disorder prediction 200 236 - -
Pral4430g00016 330 ProSiteProfiles TPR repeat profile. 148 182 IPR019734 GO:0005515
Pral4430g00016 330 SMART tpr_5 114 147 IPR019734 GO:0005515
Pral4430g00016 330 SMART tpr_5 80 113 IPR019734 GO:0005515
Pral4430g00016 330 SMART tpr_5 148 182 IPR019734 GO:0005515
Pral4430g00016 330 Gene3D Tetratricopeptide repeat domain 76 229 IPR011990 GO:0005515
Pral4430g00016 330 MobiDBLite consensus disorder prediction 306 330 - -
Pral4430g00016 330 Pfam Tetratricopeptide repeat 149 182 IPR013105 -
Pral4430g00016 330 MobiDBLite consensus disorder prediction 257 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4430g00016 Pral-Chr4430 128415 134224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4430g00016 79 176 U-box Gene Family AT3G07370 34.694 5.47e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4430g00016 K16365 - qsa:O6P43_019753 445.277