Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4430g00002 ATGCCTCTGGCTCCTCCTCGCGCATCAACAGCCTCTCAGCTCTACTGGTGCTTCCGCTGTAATCGACTGGTCAGGCTCGTCCCCTCCCACATCTCCGACATTATCTGCCCTCGTTGTTTCCAACGCTTCCTCTGTGAATTCAACCTACCAACACCCTCCCTCCTCTCCGGTTTCACCAATCCCCGCCCTTCCCCTGAATCGCGTTTGCTCGATGCCCTGTCTCTCATGCTTGACCCGCCCGTCCGCCGCTTCTCTGACCCTGAATTCGAGCTTCGACGCTTACCGTCGTTTCAGTGGAGACCTCACGAGCATGAAGGACGAACTAGTGAGAACCCACGTGTTGAGATTCCGGTTCGTCGCGTAAGACGTCCCCGACATCGTAGCCTTGATGCCAGAGATAGTGGTTTCGACCCAGAACCAGGAACCCAACCTCGTCCTCGGACTTGGGTTATTGTTCGACCTGTTGATCGTTCCAACTCATTCGAACGGATTCCTCGGCGACAGGATTCAGTCCCACGACGGGTTGATCCGAGAGACTACTTTTTTGGGCCGGGTTTGGATGAACTGATAGAACAACTGACGGAAAATGACCGGCAGGGCCAGCCTCCAGCGCCGGACAGAGCTATCGAAGCAATTCCGACTGTGAAAATATTGGCGACTCATTTGAAGGAGAACCCTCATTGCCCGGTTTGCCAGGAGGAGTTTGAAGTGGGTGGGGAAGCAAGGGAGTTAGCCTGCAAGCATATATACCATTCTGACTGCATCGTGCCATGGCTAAAGCTCCACAATTCTTGCCCCGTTTGCCGGCACGAGGTGCCGGTGCTTTCTAACTGCGACGAATCAAGGGACGATGGTGGCGGCAGGTGGCGGCGGTGTTTGAGGTGGAGTCAGTTGGCTTCCCTTTGGCCTTTCCACGGGAGGTTCCGACGGGTCAATCCGGAACGGTAG 948 0.557 MPLAPPRASTASQLYWCFRCNRLVRLVPSHISDIICPRCFQRFLCEFNLPTPSLLSGFTNPRPSPESRLLDALSLMLDPPVRRFSDPEFELRRLPSFQWRPHEHEGRTSENPRVEIPVRRVRRPRHRSLDARDSGFDPEPGTQPRPRTWVIVRPVDRSNSFERIPRRQDSVPRRVDPRDYFFGPGLDELIEQLTENDRQGQPPAPDRAIEAIPTVKILATHLKENPHCPVCQEEFEVGGEARELACKHIYHSDCIVPWLKLHNSCPVCRHEVPVLSNCDESRDDGGGRWRRCLRWSQLASLWPFHGRFRRVNPER 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4430g00002 315 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Pral4430g00002 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 273 - -
Pral4430g00002 315 SMART ring_2 228 268 IPR001841 -
Pral4430g00002 315 FunFam E3 ubiquitin-protein ligase RING1-like 192 275 - -
Pral4430g00002 315 ProSiteProfiles Zinc finger RING-type profile. 228 269 IPR001841 -
Pral4430g00002 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 275 IPR013083 -
Pral4430g00002 315 MobiDBLite consensus disorder prediction 125 146 - -
Pral4430g00002 315 Pfam Ring finger domain 227 269 IPR001841 -
Pral4430g00002 315 SUPERFAMILY RING/U-box 208 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4430g00002 Pral-Chr4430 22413 23696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4430g00002 187 304 C3H Transcription Factor Family AT1G68180 43.902 2.07e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4430g00002 K11982 - qsa:O6P43_015206 372.474