Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4428g00008 ATGCGAGAGACACCAGCAATGGAGGATTTGCAGAGTGCTCTAAAGGATCGTAATTTAACGGTTTCCACCGTGGCAGATAAGGGTCGCTGCCTCTTGGCTACGAGAGATTTTTACCCAGGAGACGTGATTATAAGCCAAGAGCCTTATGTGTGTGCGCCAAATAATTCTTCAGCCGAAACAAGGTGTGATGGATGTTTCGCGACAAGTAAACTTAAAAAGTGCTCTGGTTGTCAAGTTGTATGGTATTGTGGAAGTACATGCCAGAGGGCAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGTTCTCTCAAGGCTGGAAAAGGACAAGAGAAAATTTGTCACACCATCCATTCGACTGATGGTTATCCCAAGCACTGCTACAGACAACTATAGCTTGGTGGAGGCATTAGTGGCACACATGTCTGACATCAATGAGGGACAGCTGGTTCTGTACGCGCAGATGGCTAATCTTGTAAACTTAATATTACAGTGGCCTGAAATCAACATAAAAGAGATTGCGGAAAATTTTTCCAGGTTTGCATGTAATGCGCATACCATTTGCGACAGTGAACTGAGACCCTTGGGGACAGGATTGTATCCTGTAATTTCCATAATCAACCACAGTTGCTTGCCCAATTCAGTGTTGGTTTTTGAGGGAAGGTCAGCTGTAGTACGTGCTGTGCAACATATACCCAAAGGTTCGGAGGTGCTGATAAGTTACATAGAGACTGCTGGGAGCACTATGACTCGGCAGAAGGCTCTCAAAGAGCAGTACCTGTTCACTTGCACCTGTCCCCGCTGTGCTAGAATGGGACAATCTGATGATATTCGAGAAAGCGCAATTTTGGAAGGATACAGATGCAAGAATGAAAAATGCTATGGTTTCTTGATGCGTACTAATGATGGAAGAGGATTCCAATGCCAAGAATGTGGACTAGTCAGGGACATGGAAGAGATAAAGTTGATTGCAACGGAAGTAAAATCACTAACTGAAGATAAAGCTTCTAAACTTGATCCAACTGGCAATTATCAGGATGCTGTTGCTGCATACAAAATAATTGAGAAATTGCAATCAGAATTATGCCATCCCTTTTCAATCAGCTTGATGCAAACTCGAGAAAAGCTTTTGAAGTTATTGATGGAGGTGGAACATTGGAGAGAAGCTCTGGCATACTGCAAATTGACCTTACCAGTCTATCAAAGAGTTTATCCAGCAGTTCATCCATTGCTTGGTTTGCAATATTATACTTGTGGAAAGCTTGAATGGTATATGGGGGACACGGAGGGTGCTGTTAAATCGCTGACCAAGGCAGTGGATGTTCTAAGAATCACTCATGGGACAAATACACCTTTCATGAAGGAACTCTTGATGAAGTTGGAAGAAGCCCGTGCGGAAGCCTCTTACCAACAGTCCTCCAAAGACAAGTAG 1428 0.4356 MRETPAMEDLQSALKDRNLTVSTVADKGRCLLATRDFYPGDVIISQEPYVCAPNNSSAETRCDGCFATSKLKKCSGCQVVWYCGSTCQRAEWKLHRLECEVLSRLEKDKRKFVTPSIRLMVIPSTATDNYSLVEALVAHMSDINEGQLVLYAQMANLVNLILQWPEINIKEIAENFSRFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSAVVRAVQHIPKGSEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCARMGQSDDIRESAILEGYRCKNEKCYGFLMRTNDGRGFQCQECGLVRDMEEIKLIATEVKSLTEDKASKLDPTGNYQDAVAAYKIIEKLQSELCHPFSISLMQTREKLLKLLMEVEHWREALAYCKLTLPVYQRVYPAVHPLLGLQYYTCGKLEWYMGDTEGAVKSLTKAVDVLRITHGTNTPFMKELLMKLEEARAEASYQQSSKDK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4428g00008 475 Pfam SET domain 28 240 IPR001214 GO:0005515
Pral4428g00008 475 ProSitePatterns Zinc finger MYND-type signature. 62 99 IPR002893 -
Pral4428g00008 475 Gene3D Tetratricopeptide repeat domain 395 474 IPR011990 GO:0005515
Pral4428g00008 475 Gene3D - 61 108 - -
Pral4428g00008 475 SUPERFAMILY SET domain 6 240 IPR046341 -
Pral4428g00008 475 Pfam MYND finger 62 99 IPR002893 -
Pral4428g00008 475 SUPERFAMILY TPR-like 337 440 IPR011990 GO:0005515
Pral4428g00008 475 ProSiteProfiles SET domain profile. 17 241 IPR001214 GO:0005515
Pral4428g00008 475 Gene3D - 109 183 - -
Pral4428g00008 475 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 21 461 - -
Pral4428g00008 475 ProSiteProfiles Zinc finger MYND-type profile. 62 99 IPR002893 -
Pral4428g00008 475 Gene3D SET domain 30 267 IPR046341 -
Pral4428g00008 475 SMART set_7 17 247 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4428g00008 Pral-Chr4428 66536 72671 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4428g00008 SET 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4428g00008 K11426 - qsa:O6P43_015224 770.385