Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4426g00034 ATGCCTCTCCCACCGTCTCGGCCACCGCCGTCGCATCCTTGCCGTCTTCCCCAAAAAATTTGGCGAGCATGCGCCGGCACTTCCGTTCAAATCCCTACCCTGAATTCCAGGGTTTATTACTTCCCTCAAGGCCATTTGGAGCAAGCCTGCTCGGCTCCTTCCTCCCTCTCCCCCTTTCTCCTGTCCAAGCCCTTCATTCACTGCCGCGTCTCCTGGGTTGAATTTCTCGCTGACCCTGTTACAGACGAGGTCTTTGCCAAGCTTGTCCTCCATCCACTCAGTGATTTTGACACAACCCGCGACCACTCTCATCCCACCGGCGAGTCCGCAGAAGCACAGGGCGATGACAATGTTGGGTCGTTTGCCAAGGTTCTGACGCCTTCTGATGCCAACAACGGCGGTGGATTCTCTGTTCCGAGGTTCTGTGCTGATTCCATCTTCCCGCCATTGAATTTACAATCTGATCGGCCGAACCAGACATTGCCTTTCACTGACGTTCACGGCATCCTCTGGGAGTTTCGTCACATTTATCGAGGGACACCTAAGCGGCACTTGCTCACTACTGGGTGGAACAAGTTTGTCAATCACAAGAAGTTGATTGCTGGTGACTCCGTGGTTTTCATGAAGAATTCCGCGGGGAAAATGTTCATCGGGGTTCGCAGAGCTCTGCGATTCAGTGTTGGAAATCGTGGCAATTGGGCCGGAAGTTGCACCGATATCGGTGGCATGAAAACTAAGGTTGAACTTGACGAGGAGCAGCAGGAAGATTGCTACACTGGCTTCGGAGAATTCTCGAGGAATGGGAGGGGAAAGTTGTCCGCCAAGGCAGCTGCGGAGGCAGCAGAATCGGCAGCACAAAATAAGCCGTTCGTGGTTGTTCATTATCCTAGGCCTGGGTCGTCGGACTTTGTGTTGAAGGCGGAGGTTGTGGAGGAAGCGTTAAGAGTCAGATGGACTCCTGGAATGAGAGTCAAAATGGCTATGGAGACAGAAGATTCGTCCAGAATGACCTGGTTTCACGGGACCGTCTATTCGGTATCTGCTTCTCTTGGTCATGGGCATTGGTCGGATTCTCCTTGGCGCATGCTTCAGATTGCATGGGATGAGCCTGAAGTGTTACAGAATGCAAAGCGAGTCAGCCCCTGGCAGGTTGAACATATTTCCCCCGCAGCTCTTCTTCACACAGTTTTTCCCCCAGCAAAGAAGTTTAAAGGCGCTAAGCATGGTGGGTTGCCAATTGATAGAGAGGAAGACCCGTCATTTACTACGATGAAACTCACTAACTCAACAATGGGACACTTGAATCACTCATTGTTGAAGGACAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATCTTCCGTTTTGAGATTTTCAAACTTCCTAGATCATAATACTCGTTATTGTGCTGCTAGTTCTCATGTGAAAGTGCCGAAGTTGAAAACTGTGTCAACAGATTTACACATTGACAGCTCTCAATCTGGTCCATTATCACCAGATAGCCAGAGGAGAATCCACTCCATTGGTGGAGAGTTTGTTGGTACCGCTTGCTGCAACTCAACAATTGGTGCTGGTTCATTTCAGCTATTTGGTAAGATAATTCAAATGAACCCGCCTGTCGAAAGTGGCTTGCATGGTACTGATTGCACTGGAAATAAGGCTTGCAATGCATCTGAATGTACTGACAAGCCGCTGGATTATTCAACTTGCTCAAAATTGGTCAACAAGCTTGATATTCGATGCCAAAAAACATCACTAGTTTAG 1773 0.4935 MPLPPSRPPPSHPCRLPQKIWRACAGTSVQIPTLNSRVYYFPQGHLEQACSAPSSLSPFLLSKPFIHCRVSWVEFLADPVTDEVFAKLVLHPLSDFDTTRDHSHPTGESAEAQGDDNVGSFAKVLTPSDANNGGGFSVPRFCADSIFPPLNLQSDRPNQTLPFTDVHGILWEFRHIYRGTPKRHLLTTGWNKFVNHKKLIAGDSVVFMKNSAGKMFIGVRRALRFSVGNRGNWAGSCTDIGGMKTKVELDEEQQEDCYTGFGEFSRNGRGKLSAKAAAEAAESAAQNKPFVVVHYPRPGSSDFVLKAEVVEEALRVRWTPGMRVKMAMETEDSSRMTWFHGTVYSVSASLGHGHWSDSPWRMLQIAWDEPEVLQNAKRVSPWQVEHISPAALLHTVFPPAKKFKGAKHGGLPIDREEDPSFTTMKLTNSTMGHLNHSLLKDNTFPAGMQGARHDLSSVLRFSNFLDHNTRYCAASSHVKVPKLKTVSTDLHIDSSQSGPLSPDSQRRIHSIGGEFVGTACCNSTIGAGSFQLFGKIIQMNPPVESGLHGTDCTGNKACNASECTDKPLDYSTCSKLVNKLDIRCQKTSLV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4426g00034 590 Gene3D - 118 223 IPR015300 -
Pral4426g00034 590 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Pral4426g00034 590 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Pral4426g00034 590 SMART B3_2 121 223 IPR003340 GO:0003677
Pral4426g00034 590 CDD B3_DNA 120 221 IPR003340 GO:0003677
Pral4426g00034 590 FunFam Auxin response factor 119 223 - -
Pral4426g00034 590 Gene3D - 317 391 - -
Pral4426g00034 590 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4426g00034 590 Pfam Auxin response factor 280 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4426g00034 590 SUPERFAMILY DNA-binding pseudobarrel domain 114 226 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4426g00034 Pral-Chr4426 230197 234858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4426g00034 20 564 B3 DNA Binding Superfamily AT1G77850 47.425 1.38e-152 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4426g00034 B3 5.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4426g00034 - - qsa:O6P43_019702 739.954