LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4426g00020	ATGGGTCGCGTTAAATTGGAGATTAAGAGAATAGAGAACACCATAAATCGTCAGGTCACATTCTCCAAGCGCAGAAATGGCCTCATCAAGAAAGCCTACGAGTTATCCATTCTCTGCGACATTGATATTGCCCTCATCATGTTCTCTCCTTCCGAACGTGTCAGTCACTTCTCCGGCAGACGAAGAATTGAAGATGTATTCGCACGTTACATCAACCTACCAGATCAAGAAAGAGATGGCGCTATAACTTTTCCAGAGCAACCCTACCGCAGGAGTCTTCAGAACAAAGAGCATCTGCTGAGGACCCTAGAACAACTGAAAAGTGAGAATGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATCAACTCGGAGATCGAAGAGCTGCAGCAGGAAGTGAGTGGGTTACAGCAACAGCTTCAAATGGCGGAAGAACAGCTACGGATATTTGAACCGGAGTTGTCGAAGATGACATCAGCGGGGGAGCTGGAATCCAGCGAGAAGCATCTGATGGAGACGCTGGCGCGAGTAATGCAGAGGAAGGAATATCTGATGAGCAACCACGTGTCGCTGGAGACGTCGCTGGAGAATGTGGGATGGTTGGGGGAGGCGGCCGACAACCATTCCCATATATTTGACGCTTCCGTGCCTCTGGATCCACTGTCGTCCACCGTGTACGACGCTTTCTCGCAGGGAGGCTCCACATCCAACGGAACCGCCGATCCAAATCTGCAGGCCTGGCCTCAAGGCTACACTTTATATCCCTCCATCCAGCAGCAGGAGATGCAGGATATGATGCCGCCTCATGCGCAGCTCAACAATCTGCCCACCATCCCCGCCGACTTTGATTCCAAACCTCCCCAGTGA	867	0.5144	MGRVKLEIKRIENTINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSERVSHFSGRRRIEDVFARYINLPDQERDGAITFPEQPYRRSLQNKEHLLRTLEQLKSENDIALQLANPGDINSEIEELQQEVSGLQQQLQMAEEQLRIFEPELSKMTSAGELESSEKHLMETLARVMQRKEYLMSNHVSLETSLENVGWLGEAADNHSHIFDASVPLDPLSSTVYDAFSQGGSTSNGTADPNLQAWPQGYTLYPSIQQQEMQDMMPPHAQLNNLPTIPADFDSKPPQ	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4426g00020	288	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Pral4426g00020	288	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Pral4426g00020	288	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Pral4426g00020	288	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Pral4426g00020	288	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Pral4426g00020	288	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Pral4426g00020	288	Gene3D	-	14	97	IPR036879	GO:0003677\|GO:0046983
	Pral4426g00020	288	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983
	Pral4426g00020	288	FunFam	MADS-box transcription factor 41	13	92	-	-
	Pral4426g00020	288	MobiDBLite	consensus disorder prediction	269	288	-	-
	Pral4426g00020	288	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	243	-	-
	Pral4426g00020	288	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Pral4426g00020	288	Coils	Coil	126	146	-	-
	Pral4426g00020	288	Coils	Coil	89	116	-	-
	Pral4426g00020	288	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4426g00020	Pral-Chr4426	139612	142571	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4426g00020	1	288	Type I MADS-box Gene Family	AT1G22130	52.083	9.19e-104	304

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Pral4426g00020		SRF-TF	2e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4426g00020	-		-	pvu:PHAVU_008G170400g	377.867